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GT14735

CSHL Arabidopsis genetrap mutant lines

Original: GT14735

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14735

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 60081 [Map]; Strand: c
      • AT4G00150.1 - [+] show detail - GRAS family transcription factor
        Distance: -795; Region: promoter
    Flanking Genome Sequence: GT14735 - 3-prime edge
    TATTTTACCG ACCGTTACCT ACCGTTTTCA TCCCTAATTG AACAGCTAAG 
    ATACTGTTCA TATACTTTCT TTGTTACATC TTTTCTTTTT AAGAAAAAAA
    TGATTGAAGA TCTGTGAATG ATGTTTCTTC TGTGACAAGT TAAACGCACG
    AGAGATTGAG AAAGAACGTG TGGTAGTCCT CTATTGAGCA GACAATGGAA
    GTCACCTATC ACCATATATA TATATATACA CATGGACATA TCTACCAATG
    GAAAACCCTA TAATAAATAA ATGAATAAAG CAATCAGAAA AGAAAAAATA
    AAAAAAAAAA AAAAAAAACG GGGGGGGGGG G
  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22054563 [Map]; Strand: c
      • AT3G59700.1 - [+] show detail - lectin-receptor kinase
        Distance: 288; Region: intergenic
      • AT3G59710.1 - [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
        Distance: 374; Region: intergenic
    Flanking Genome Sequence: GT14735 - 5-prime edge
    CTTTCTCCCT GCTTTTGACA GCAACTTGGA TTCGAAAAAG GTTTTGAAAT 
    AGTAGATTAA ATATCTATAT CACATCTGTT TAGGGTTCTT TGAATTCATG
    AACCATAGAA ACATAATCGG AGCTTTGTTT GATCACGTTC TTCTATTTGG
    ATAATTTCTG CAGATACTCC TGACGAATTG GCGTATCAAA GAGGCAACAG
    TATAGTATTA TAAGATTTCT TAACCATTCA ATTTCATAGG ATTTACCGGA
    CAATGGTCTC TAAGAAACAG AGACGAAAAC TTTACCTGAT TTAGATATAT
    CCTCTAAAGA GTTGATTTTC AAGATTAATA ATCGAGTTGT TATCAAATAC
    AAAAGGATTA AAAAAATGTT TGGAGGAGGC GGTGTGGTCT TATTCTTGTA
    CATACCAGGG AAAAAAACAT TCGGCTGTGT ATTACAATGT GTAATAATCT
    CAGTTGTGAT ACATCTTCAT AGCAAACAAA GAATCAGTGG TAAACTTAAA
    ATTTCAGCGG CCGTGGGAGA CAAAAGAAGA GTCGGTTAAC TCCAATGAAC
    TCGATGTATT CACATCAAGT AGTAGTAATT CCATTGATGT CTCAGGCCAT
    TCTCTAAATT TCTCAGCCCT TACAACATCA AGAAGATTAT CTGGTAGCTG
    TGAAACTCCA TTCAAAATCC TCATTACCAC ACTCATAGCC GGTCTTATCG
    ATGCAGCTTG ATGCGAACAC AAC

AT3G59700.1

Model type
Protein coding
Short Description
lectin-receptor kinase
Curator Summary
member of Receptor kinase-like protein family
Computational Description
lectin-receptor kinase (HLECRK); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, LP.10 ten leaves visible, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Legume lectin, beta chain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: Concanavalin A-like lectin protein kinase family protein (TAIR:AT3G59740.1); Has 126414 Blast hits to 124878 proteins in 4927 species: Archae - 148; Bacteria - 14786; Metazoa - 45832; Fungi - 11120; Plants - 35211; Viruses - 459; Other Eukaryotes - 18858 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G59710.1

Model type
Protein coding
Short Description
NAD(P)-binding Rossmann-fold superfamily protein
Computational Description
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: leaf lamina base, root, carpel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT5G51030.1); Has 60289 Blast hits to 60264 proteins in 3086 species: Archae - 599; Bacteria - 42094; Metazoa - 4067; Fungi - 2569; Plants - 1993; Viruses - 0; Other Eukaryotes - 8967 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00150.1

Model type
Protein coding
Short Description
GRAS family transcription factor
Computational Description
HAIRY MERISTEM 3 (HAM3); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor (TAIR:AT2G45160.1); Has 2283 Blast hits to 2233 proteins in 293 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 2281; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR