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GT14604

CSHL Arabidopsis genetrap mutant lines

Original: GT14604

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14604

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 107759 [Map]; Strand: c
      • AT2G01180.1 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: 0; Region: exon2 (CDS)
      • AT2G01180.2 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT14604 - 3-prime edge 
    CGACCGTTAC CGACCGTTTT CATCCCTAAC CTTGATGGAG TCAGTGATGA 
    CACCAGTTAT CAAGACGGCG AAGAGCAGCC CGAGGATGCT GTGGTGCAGA 
    TCGTACACAC ATGTCCTCTT CAGGTAGAAG CAGACGAACA CTATGATGGG 
    AAGAAGCACA GCGTACACAG GGACAGACCA GATAGGTACG GTGTTGTCCT 
    TGAAAGGGTA CTTGAGGTCA GTCATCATGT CTTTTCCCAC GTAGCGGTAG 
    AAAGGAGAGA TGAGGTTCAA GCCTATCTCG ATGGCAATCA AGATGACGAG 
    TATGATCCAA TCGTGCTTGT GTTTAGAAGC GACTCTTCCT CCATGGGACT 
    TTATAGTGTG AACACTAAGA TCTATCTCCT GCATCCTCCC TCTCTGCGCC 
    TCCTGGTCCT GCCACCAAAA ACACAAACAA TCATCACAGT CAACTAAACC 
    TTCTTCTAAT TGGATCTAAA CAAACAATTC TGNNCTTCTT TCTAAGAAAT 
    ACTNACTTGA GGGTTAGGGC TTGACATCTC CGGTTTGGAT GATAGTAACA 
    ACGGAATGCA ATTCATTCTA TCGGATGAAC AAATTGGTTT AGGCAAACAA 
    AGAACTTTGT CAAAGACACG ACAACACTTT GCTCTACGGA TCCAGACACT 
    TTTTGTCTGT CTGATTCGTT ATGCTAAGCA CACCACTGTT TCATTAACAA 
    TGTTTTCGTT GACTCTATTT AACTACTTTA TTTTCAATGT TAGGATTTTT 
    AAAATGATAA AGAAAAAAGG AGTAGAACAG AGAATAGTCG ATTGAGGTTA 
    CCTGAGAATT GCGCCCGAAT AAGAGAGAAG AGAAAA

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 107685 [Map]; Strand: c
      • AT2G01180.1 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: 0; Region: exon2 (CDS)
      • AT2G01180.2 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT14604 - 5-prime edge 
    CCTACTTTCT CCCTGATCAG GTAGCCACCG GACGCCCTCG TCCTAACTTC 
    TACTGGCGCT GCTTCCCCGA CGGCAAAGAG CTGTATGATG CGTTGGGAGG 
    TGTGGTATGC CACGGCAAGG CAGCTGAGGT CAAGGAAGGC CACAAGAGCT 
    TCCCGAGCGG ACACACTTCC TGGTCCTTTG CGGGGCTTAC ATTCCTTTCC 
    CTTTACCTCT CTGGCAAAAT CAAGGCCTTC AACAATGAAG GACATGTGGC 
    TAAACTCTGC CTCGTGATCT TCCCTCTGCT TGCCGCTTGT CTTGTGGGGA 
    TATCTCGTGT GGATGACTAC TGGCACCACT GGCAAGATGT CTTCGCAGGA 
    GCTCTCATTG GCACCCTTGT AGCCGCCTTC TGCTACCGTC AGTTCTACCC 
    CAACCCTTAC CACGAAGAAG GATGGGGTCC CTACGCCTAT TTCAAGGCAG 
    CTCAAGAACG AGGAGTCCCT GTGACCTCCT CCCAAAACGG AGATGCCTTG 
    AGGGCTATGT CTCTGCAGAT GGATTCAACA TCTCTCGAAA ACATGGAATC 
    TGGCACTTCC ACCGCTCCCA GAAGAACCTC CTCTCTTATT ATTTGATTCA 
    TTATTTGGGT TTTCATTTTG

AT2G01180.1

Model type
Protein coding
Short Description
phosphatidic acid phosphatase 1
Curator Summary
Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves.
Computational Description
phosphatidic acid phosphatase 1 (PAP1); FUNCTIONS IN: phosphatidate phosphatase activity; INVOLVED IN: phospholipid metabolic process, response to stress; LOCATED IN: plasma membrane, integral to plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase/chloroperoxidase, N-terminal (InterPro:IPR016118), Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: lipid phosphate phosphatase 3 (TAIR:AT3G02600.1); Has 2118 Blast hits to 2110 proteins in 392 species: Archae - 9; Bacteria - 357; Metazoa - 920; Fungi - 399; Plants - 198; Viruses - 3; Other Eukaryotes - 232 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01180.2

Model type
Protein coding
Short Description
phosphatidic acid phosphatase 1
Curator Summary
Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves.
Computational Description
phosphatidic acid phosphatase 1 (PAP1); FUNCTIONS IN: phosphatidate phosphatase activity; INVOLVED IN: phospholipid metabolic process, response to stress; LOCATED IN: plasma membrane, integral to plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase/chloroperoxidase, N-terminal (InterPro:IPR016118), Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: lipid phosphate phosphatase 3 (TAIR:AT3G02600.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR