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GT14495

CSHL Arabidopsis genetrap mutant lines

Original: GT14495

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14495

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 1543307 [Map]; Strand: c
      • AT2G04450.1 - [+] show detail - nudix hydrolase homolog 6
        Distance: -13; Region: promoter
    Flanking Genome Sequence: GT14495 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTCGAACCAA 
    TGTCTTCAAG ATTGTGAAAA TGCCTCTTTG GTTCCAAAGT CGCTGTGTAA 
    CTTAAGAGAG AGTGACTGTT CCGTTGACAG AGCAAAATGG CCCAAATCTA 
    TTGAAAACCC CAAAAACCTT AATTTGGAAT CTCATCTCAT TTTGCTTCTG 
    TTCTTTTCCA AGTAATTTCA ACAAAGTTTG AAACTTTAAG TCTGTGTAGC 
    AACTCAATTA CATGGAAATT CTTAAAAGTC TACTCTTTAA GTCGTCCTCT 
    GGGCTGAAAC TCTCAGCTTC TTGTTATAAA ACCTGAAGTT CAAATCATTC 
    CAATACCACA AATAACTCAA CTTTCTTCAA GGTATGTCTT CTCTTACTCA 
    CATTTGATTT TGGGAACTTG AGTTTTCTTA GAATATGGAT TGGTTCTTTT 
    TGTAGCATGG ACAGTGAAGC TCAGGAGTCC CTTTTACTTC AAGGGGTTGC 
    AGATAATTAT GGAGGTGTTA AGGTGAACTT GACAGAACCA ATGACTATTG 
    AGGATTTTGT CCCAAAGCTG AGAGCTTCAC TTGTGTATTG GAGCAATCAG 
    GTATTTCATT AATAGACCAC TTCAGATTTG AGACTTAGAG AGACTCTTTA 
    GAAGACACTT GTAGTCTAGT GGCAATGAGT TG

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 26259113 [Map]; Strand: w
      • AT1G69780.1 - [+] show detail - Homeobox-leucine zipper protein family
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT14495 - 5-prime edge 
    CCTACTTTAT CCGTTTTCGT TTGATAATGG CTTTAAGACA AAGATTGGCA 
    AGAAGAAAAA ACTAAAGAGA AACGAACAAA ATCTCAAGCA AACAGTACTT 
    ATCTTCTGTT GCAAAACAGA AGAAGATGTC TTGTAATAAT GGAATGTCAT 
    TTTTCCCTTC AAATTTCATG ATCCAAACCT CTTACGAAGA TGATCATCCT 
    CATCAATCTC CATCTCTTGC TCCTCTTCTT CCTTCTTGCT CTCTACCTCA 
    AGATCTCCAT GGTATATATA TACATAAACT TCCACACACA TCTCCTCTGT 
    TTTCTCTCTC TCTATCTCTA TCTCTTTCTA ATGCTCTGTT CTGTTCTGTT 
    TCAGGATTTG CTTCGTTTCT AGGTAAGAGA TCTCCAATGG AAGGGTGTTG 
    TGATTTAGAA ACTGGGAACA ATATGAATGG AGAAGAGGAT TATTCAGATG 
    ATGGGTCACA AATGGGAGAG AAGAAGAGGA GATTGAACAT GGAACAAGTG 
    AAGACACTAG AGAAGAACTT TGAGCTTGGA AACAAACTTG AACCAGAGAG 
    GAAAATGCAG CTAGCTCGTG CCTTAGGTTT GCAACCAAGA CAGATCGCGA 
    TTTGGTTTCA AAATCGAAGA GCTCGTTGGA AAACAAAGCA GCTAGAGAAA 
    GATTATGATA CTCTTAAACG ACAGTTTGAT GCACTTAAAG CCGAAAATGA 
    TCTTCTTCAA ACTCATAATC AGAAACTCCA AGCTGAGGTA ATTAATCTCA 
    TAATCCAACA AAAAAAAA

AT1G69780.1

Model type
Protein coding
Short Description
Homeobox-leucine zipper protein family
Curator Summary
Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.
Computational Description
ATHB13; FUNCTIONS IN: sequence-specific DNA binding, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: cotyledon morphogenesis, regulation of transcription, DNA-dependent, response to sucrose stimulus, leaf morphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Helix-turn-helix motif, lambda-like repressor (InterPro:IPR000047), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox protein 23 (TAIR:AT1G26960.1); Has 11763 Blast hits to 11710 proteins in 595 species: Archae - 0; Bacteria - 0; Metazoa - 9272; Fungi - 193; Plants - 2061; Viruses - 5; Other Eukaryotes - 232 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G04450.1

Model type
Protein coding
Short Description
nudix hydrolase homolog 6
Curator Summary
Encodes a protein with NADH pyrophosphatase activity. Although this protein was also shown to have ADP-ribose diphosphatase activity in vitro, mutant analyses suggest that NUDX6 is involved in NADH metabolism in vivo.
Computational Description
nudix hydrolase homolog 6 (NUDT6); FUNCTIONS IN: hydrolase activity, ADP-ribose diphosphatase activity, NAD or NADH binding, NADH pyrophosphatase activity; INVOLVED IN: response to other organism, positive regulation of salicylic acid mediated signaling pathway; LOCATED IN: cytosol; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797), NUDIX hydrolase, conserved site (InterPro:IPR020084), Nudix hydrolase 6-like (InterPro:IPR003293), NUDIX hydrolase domain (InterPro:IPR000086); BEST Arabidopsis thaliana protein match is: MutT/nudix family protein (TAIR:AT4G12720.3); Has 2998 Blast hits to 2996 proteins in 719 species: Archae - 33; Bacteria - 1649; Metazoa - 236; Fungi - 25; Plants - 166; Viruses - 14; Other Eukaryotes - 875 (source: NCBI BLink).
Link
InterPro Scan - TAIR