1. Home
  2. Mutant Lines
  3. GT14491

GT14491

CSHL Arabidopsis genetrap mutant lines

Original: GT14491

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14491

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 389871 [Map]; Strand: c
      • AT2G01860.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: exon1 (3UTR)
      • AT2G01870.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT14491 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTATTTTCAG 
    GCAAAGATGA AAGTGGAAAC TTAACAATGT CAGAATCAGA CATAGCAACA 
    CTGTTTTCTT CTGGAACTGA TTCTGGTCCA TCCATGGATG GTTTTATCAC 
    TGTAATGAAC AAAATGTTGT AGAACAAGGT AAGAGCTAAG AGAACAAAAG 
    CTGAACTTGT GAGGAACGAT CCGGAGATCT CAGGTGGTTC TTCAAACATG 
    ATTGGATCAT TGTTGGTTCT GACCACATCT GATGATGTCT TGTTGATGAT 
    TCTTGGTTTC TCATCAGCTT GAGATTCTAT TTGTTGATCA AGCTGTTTCA 
    GAGCTTCTCT AGCTTTCTCC CTATCGATTT GGAATGAATC TTCTCTTTCA 
    GTGGCTTGGA CAATACGCAT CAAATGTCTC

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 224113 [Map]; Strand: w
      • AT2G01490.1 - [+] show detail - phytanoyl-CoA dioxygenase (PhyH) family protein
        Distance: 695; Region: intergenic
      • AT2G01500.1 - [+] show detail - Homeodomain-like superfamily protein
        Distance: 43; Region: intergenic
    Flanking Genome Sequence: GT14491 - 5-prime edge 
    CCTACTTTCT CCCTGAATGT CAGCATCGAA TGTCTCTCTC AGAGAGTCGC 
    ATATAAAATT GCAGTGGAAC AAGAAAAGAA AGAAGAAAGC ATGTGAACAA 
    GTAGAAAAAC ATCAATTACT AACAAACATC TAATTAATAT ATATTCCTTA 
    CATTGACAAG GAACCATCGA AGCTTTCAGT TTCACTTTCA GACATATGTA 
    TAGATAGTTG CAACTCCAAA CCCAAGCCCC AACATGGTCC ACCTTCTCAT 
    TTGGGTAATA ACTAACAATA ATAATCTTCA AACGCTCCTA TATAACATTT 
    ACTACACGTC TCCATCTTCA AACGCTTCTC TTCTATTATA AGAACACATC 
    ACTTACCATT CGTGGACAAA ACAACAAATA AAACCTTCAT TAAAGTCCTA 
    TTTATTATTC ACACATGGGT TTTTTGTTTC AGTTCTTCAG AGGCATGAAC 
    TCGTAGTAGT AACAGTAGTT GCATGCTTTC GTCTTCTCTA TCAACCGGCC 
    TGTTTTCTCT TGGTACTCCC TAACCGGAAA GAGATTTAAA GTCCGGTTGT 
    CCCTCGTTTC TTC

AT2G01490.1

Model type
Protein coding
Short Description
phytanoyl-CoA dioxygenase (PhyH) family protein
Computational Description
phytanoyl-CoA dioxygenase (PhyH) family protein; FUNCTIONS IN: phytanoyl-CoA dioxygenase activity; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phytanoyl-CoA dioxygenase (InterPro:IPR008775); Has 2926 Blast hits to 2921 proteins in 334 species: Archae - 4; Bacteria - 485; Metazoa - 347; Fungi - 101; Plants - 64; Viruses - 0; Other Eukaryotes - 1925 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01500.1

Model type
Protein coding
Short Description
Homeodomain-like superfamily protein
Curator Summary
PFS2 encodes a homeodomain gene that is a member of the WUS clade of transcription factors. It delays differentiation and maturation of primordia and regulates ovule patterning. The pfs2 mutant exhibits developmental defects in the maternal integuments and gametophyte, specifically, the boundary between the chalaza and the nucellus shifted towards the distal end of pfs2 ovule primordia. In addition, leaves displayed curling and petals were wavy and crenulated. Overexpression of PFS2 affects floral organ and leaf development. Single- and double-mutant analyses reveal that PFS2 activity represses AGAMOUS expression in young floral primordia. Also involved in regulation of response to low temperature.
Computational Description
PRETTY FEW SEEDS 2 (PFS2); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 9 processes; LOCATED IN: primary endosperm nucleus, nucleus; EXPRESSED IN: 12 plant structures; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057); BEST Arabidopsis thaliana protein match is: WUSCHEL related homeobox 1 (TAIR:AT3G18010.1); Has 564 Blast hits to 564 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 560; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01860.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
EMBRYO DEFECTIVE 975 (EMB975); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: LATERAL ORGAN JUNCTION (TAIR:AT2G39230.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01870.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 11 Blast hits to 11 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR