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GT14490

CSHL Arabidopsis genetrap mutant lines

Original: GT14490

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14490

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 5459762 [Map]; Strand: w
      • AT3G16100.1 - [+] show detail - RAB GTPase homolog G3C
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: GT14490 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTACCAAAGA 
    GTTATATAAC CTAACACACT TAAAAGACAA TCCATAAAAA CTAGAGTATG 
    TATGTAAACT AAAGTGTGTG TTTCTAAAAC TCATCAGTCA CATTATATAT 
    ATAATTAGAT AACACACACG GTGATTACCT GCAAAGTGAA GATTCTGTCA 
    TCAATTTGGA CCTCTTTGGT CAAGAAATCA GCTCCAATGG TAGCTTTATA 
    CTGATTACTG AATTTTCGAT TCACAAACCT AACAAAGGAG ATAAATTAAA 
    AAACAAAAAA CGAATCATAA CAAGGAAATT TTCAGATCCT GAGGACTATA 
    GTATAGAGAA TACATACTGA TTCATCAAGG ACGTCTTCCC AACCCTGAGC 
    AAAATCAACG ATCAAAATGT TCTTTTCAAA AACCAAAATC CAGAGAGAAT 
    GAATGAACAT TCAGGAGATA TTCGAAAGAA GAAAATAATT ACCCACTGTC 
    TCCGAGAATT ATAACC

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 2981226 [Map]; Strand: c
      • AT5G09610.1 - [+] show detail - pumilio 21
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT14490 - 5-prime edge 
    CACTTTCTCC CTGCCCTGAT CCCTCTTGAG TCTGATTATC GGCTGCAGTT 
    GAGAACACCT TCAAGAGAAT GAAACGAGAC AATCAACATT TTAGTAAAAA 
    CTTGACAAAA ACAATGGTAG CTTTGGATGG CTCATAAATT AGTATATATC 
    ACAGGAATGT GCTTTCATGA CCCCTGTTAA AGAAGAACCA GAGAGATCTC 
    GAGCGTACAA AGAGAATCGA AGAGATTGTG ATTGCAAAAG TGTTACTTAT 
    ATAGAGAAGA GGAGATTCTG TGTTCGTAGT TGGAATAGGA ATCGCAGGAG 
    TTATAGAGAT AAGAGCTCCG GTCCCAAGTC ATTTTCGATT TGGAGGACTC 
    GCATAGAGTT TTAAATTTTT TAATTTTTTT AACAAACGCA AAAATTAGCC 
    TGATTAAAGT TATTGATAGA AATTGCATTA AAAATTAAAA CATCATCACT 
    GCAAATAAAA CAATATTTTA ACTCATCTTT TCCCGAAATT GA

AT3G16100.1

Model type
Protein coding
Short Description
RAB GTPase homolog G3C
Computational Description
RAB GTPase homolog G3C (RABG3c); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog G3D (TAIR:AT1G52280.1); Has 25544 Blast hits to 25522 proteins in 774 species: Archae - 27; Bacteria - 219; Metazoa - 13379; Fungi - 3488; Plants - 2822; Viruses - 20; Other Eukaryotes - 5589 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G09610.1

Model type
Protein coding
Short Description
pumilio 21
Curator Summary
Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.
Computational Description
pumilio 21 (PUM21); FUNCTIONS IN: RNA binding, binding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 16 (TAIR:AT5G59280.1); Has 4825 Blast hits to 2764 proteins in 231 species: Archae - 2; Bacteria - 5; Metazoa - 477; Fungi - 433; Plants - 446; Viruses - 4; Other Eukaryotes - 3458 (source: NCBI BLink).
Link
InterPro Scan - TAIR