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GT14428

CSHL Arabidopsis genetrap mutant lines

Original: GT14428

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14428

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 15684020 [Map]; Strand: w
      • AT4G32500.1 - [+] show detail - K+ transporter 5
        Distance: 0; Region: intron9 (CDS)
    Flanking Genome Sequence: GT14428 - 3-prime edge
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCAGGG 
    ATGAAAGTAG GATGGGAAAA TCCCGTACCC GACCGGATCG TATCGGTTTC
    GTTAGGGTTT GAGCCTCGTT TCAGCAACTG ATGCAGCAGT AAATCGTCTC
    CTCTGGCTGC TGCAAAACAT AAGCTGAGAG GTAAATCCAT TTTCCCCTGA
    GCCAACATGA GTTCTGTCTC AGCCAAAATG CCTTTCATCA CTGGATCTGT
    TGAGTCTTTC AGATGCTGCA TTAGACCAAA ACATATCCCA GATGAGAAAA
    AATAGTCAAA CCAGCTAAAA TGTTGTAGTC ACTATGGATT TATACGGAAA
    TAGCTTCGGA CTAACCTGAA GAAGATTATT CATGATTATT GCCCCATCAC
    CAACGTTTGC CTGAACAAGA TTTAAGAATG CTGTACGGTT CAGACGAAGC
    AATTGACTCA ATCGTTTGGT TCGAACTGTG AACAACTGTG GCCTGTAACA
    TAGAACCCCA ACTTCACCAA AAACATGGCC GGTCTGTGCT TCACCAACTA
    CCTGCAATGA ATACACAACT CACAACTTAA AAACCGTCCC AAAAGAGAAA
    TAAAAATGCG GATTTTACCT GATCCACTCC ATTCA

AT4G32500.1

Model type
Protein coding
Short Description
K+ transporter 5
Curator Summary
Encodes AKT5, a member of the Shaker family potassium ion (K+) channel. This family includes five groups based on phylogenetic analysis (FEBS Letters (2007) 581: 2357): I (inward rectifying channel): AKT1 (AT2G26650), AKT5 (AT4G32500) and SPIK (also known as AKT6, AT2G25600); II (inward rectifying channel): KAT1 (AT5G46240) and KAT2 (AT4G18290); III (weakly inward rectifying channel): AKT2 (AT4G22200); IV (regulatory subunit involved in inwardly rectifying conductance formation): KAT3 (also known as AtKC1, AT4G32650); V (outward rectifying channel): SKOR (AT3G02850) and GORK (AT5G37500).
Computational Description
K+ transporter 5 (KT5); FUNCTIONS IN: inward rectifier potassium channel activity, cyclic nucleotide binding; INVOLVED IN: potassium ion transport, N-terminal protein myristoylation, ion transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Potassium channel, voltage-dependent, EAG/ELK/ERG (InterPro:IPR003938), Protein of unknown function DUF3354 (InterPro:IPR021789), Ankyrin repeat-containing domain (InterPro:IPR020683), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Shaker pollen inward K+ channel (TAIR:AT2G25600.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR