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GT14196

CSHL Arabidopsis genetrap mutant lines

Original: GT14196

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14196

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT14196 - 3-prime edge
    TATTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTAGAGA TCCAATTCGC 
    CCTATAGCGA GTCGTATTAC GCGC
  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3118103 [Map]; Strand: w
      • AT3G10113.1 - [+] show detail - Homeodomain-like superfamily protein
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: GT14196 - 5-prime edge
    TCTACTTTCA TCCTGCTATA CGTGCTCTTT GGCTTTTCAT CTCACTCGAC 
    AGACGACAGC GTCAATGATG ATGTTACTTC TCTTTCTGAT AGGCATCTCT
    TGTATGGCCT GAACCCACTT GCCTTTACAG GATTACCAGA TCCTTGTTTT
    TCTAAGGAGC TTAACCGTTT CCATGAAGAA CTTATCGGCT CTGCACTCTT
    CTCCAAGTTC TCAGATGCTT CTGTAACCGA GCCAAATGCA TTAGAACCAG
    TACAAAACGT TTCCCATACA CCAAGAGATA AATTAGTGTC AACTAGCATC
    CCTGAGTAGT GATTCTCCTG ACACGTCAAT TGTTAAAGAT CATCATCATT
    GTAAGAGGAT GGTTTGTGAG ATTCTTCCGC GACAAGGACA ATCTTCCCGA
    AAAGAGTAAT GCTTGAAATG GGGGTTGAAC CAATGTCAGA ATCATCTTTG
    AAACGTTGCT TGGATGTTGC GTAGTTATTC TTTTAATCTA TGGAAGTTGC
    ACCAATGGAT TGGATGCCAC TGGTACACGA ATTAGGCGAA GAGCATCTAT
    TGACTTGAT

AT3G10113.1

Model type
Protein coding
Short Description
Homeodomain-like superfamily protein
Computational Description
Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT1G18330.2); Has 1478 Blast hits to 1458 proteins in 141 species: Archae - 0; Bacteria - 0; Metazoa - 111; Fungi - 27; Plants - 1117; Viruses - 0; Other Eukaryotes - 223 (source: NCBI BLink).
Link
InterPro Scan - TAIR