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GT14092

CSHL Arabidopsis genetrap mutant lines

Original: GT14092

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14092

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25261938 [Map]; Strand: c
      • AT5G62940.1 - [+] show detail - Dof-type zinc finger DNA-binding family protein
        Distance: -3257; Region: intergenic
      • AT5G62950.3 - [+] show detail - RNA polymerase II, Rpb4, core protein
        Distance: 241; Region: intergenic
    Flanking Genome Sequence: GT14092 - 3-prime edge 
    GTTACCGACC GTTTTCATCC CTAAACTCAA CCATATGTAT GCGCGAATTT 
    GAATATTTCT ACCATATATT TATCATTA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25261913 [Map]; Strand: c
      • AT5G62940.1 - [+] show detail - Dof-type zinc finger DNA-binding family protein
        Distance: -3232; Region: intergenic
      • AT5G62950.3 - [+] show detail - RNA polymerase II, Rpb4, core protein
        Distance: 266; Region: intergenic
    Flanking Genome Sequence: GT14092 - 3-prime edge 
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTAAA 
    CTCAACCATA TGTATGCGGA ATTTGAATAT TTCTACCATA TATTTATCAT 
    TATAGCTCAG TGAAACAATG GAATGGATTA CATATGCTTT CATAAAGGTT 
    GAGATACCTA TTTTTGCTCA ATATCAAGAT GTCAAACCTT ATGCTTATCC 
    AACGAAATTT GAAATAATAT TCGACAAGAA AAGTATATTA AATAAGTTGT 
    ATTATTCTCC TTTAGTATAA TTATAGAACA TATTCCTCTA CACTTTTGTG 
    GGTCGTACCT CTATATTTTA AAGTTTAAAT CATTTAGTAT GGACCTGTTT 
    TTTTTTTCTT TGTTAAGGAA GGGACGTAAA TTGTTCGATC GATTATCTTC 
    TTAACTTAAA AAAAAACAAA CTCAATCTAG TTAAAAAGCG TTTAAGAGGA 
    TGGTTCCAAA ATCAAAACAT AA

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25261830 [Map]; Strand: c
      • AT5G62940.1 - [+] show detail - Dof-type zinc finger DNA-binding family protein
        Distance: -3149; Region: intergenic
      • AT5G62950.3 - [+] show detail - RNA polymerase II, Rpb4, core protein
        Distance: 349; Region: intergenic
    Flanking Genome Sequence: GT14092 - 5-prime edge 
    AATCCGAATA ACATTCAAGA AGAAATACAT AGACAGAATT TTGAATATAA 
    TACTCTTGTA GTGTTTGTGA TCTCAATTAG ACATGGTTTA TGTTCATTAG 
    TGTGCTGGTT CAGTCGTGAT CCCGGTAAAG GAAGATCATT TTCTTTGATC 
    AGTTGGTTTG GAAGTGATTT ATTTCGGTTT GGGTAAAACC AAGTTGTTAG 
    GAAGTTTTAA ATTTTTGTTT TCTGATATGC TTCTTTTAGT ATCCAATTTT 
    CCTGTTTGTA CAAATTTACA TATAATCCTT AAGAGTATGT AACTTAAACT 
    TACATCAACT CCATTTTACA TATACTTCAT TTTTTCCAAA TAT

AT5G62940.1

Model type
Protein coding
Short Description
Dof-type zinc finger DNA-binding family protein
Curator Summary
HCA2 induces the formation of interfascicular cambium and regulates vascular tissue development in the aerial parts of the plant. Evidence from both gain of function and dominant negative alleles.
Computational Description
HIGH CAMBIAL ACTIVITY2 (HCA2); CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: TARGET OF MONOPTEROS 6 (TAIR:AT5G60200.1); Has 1915 Blast hits to 1778 proteins in 135 species: Archae - 0; Bacteria - 49; Metazoa - 135; Fungi - 61; Plants - 1116; Viruses - 0; Other Eukaryotes - 554 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G62950.3

Model type
Protein coding
Short Description
RNA polymerase II, Rpb4, core protein
Computational Description
RNA polymerase II, Rpb4, core protein; FUNCTIONS IN: DNA-directed RNA polymerase activity, catalytic activity, nucleotide binding; INVOLVED IN: cellular metabolic process, transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HRDC-like (InterPro:IPR010997), RNA polymerase II, Rpb4 (InterPro:IPR005574), RNA polymerase II, Rpb4, core (InterPro:IPR006590); BEST Arabidopsis thaliana protein match is: RNA polymerase II, Rpb4, core protein (TAIR:AT3G28956.1).
Link
InterPro Scan - TAIR