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GT14007

CSHL Arabidopsis genetrap mutant lines

Original: GT14007

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14007

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT14007 - 3-prime edge 
    TATTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTACATA TACATACCAT 
    TTCTGAAGCT CTTAGGATTA TATTTCCAAC AAGATCAAC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3251138 [Map]; Strand: w
      • AT5G10330.1 - [+] show detail - histidinol phosphate aminotransferase 1
        Distance: -1000; Region: promoter
    2. Chromosome: 4; Position: 11045523 [Map]; Strand: w
      • AT4G20520.1 - [+] show detail - RNA binding;RNA-directed DNA polymerases
        Distance: -389; Region: promoter
    3. Chromosome: 4; Position: 11114717 [Map]; Strand: c
      • AT4G20725.1 - [+] show detail - transposable element gene
        Distance: -351; Region: promoter
    Flanking Genome Sequence: GT14007 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTACATAT 
    ACATACCTTT CTGAAGCTCT TAGGATTATA TTTCCAACAA GATCAACTTT 
    GCTCCATTTG TACTGTCTTC CGAGAGTTAT AGGTTTTTCA CTCAAGCATG 
    CGTTGTCTAT TGGGCCATAG ATCCGTCTAC ACCCGATCTG TCAGCTTTCA 
    GATCGATTTC CCGGCAATCT AAATGGAATT AGGACACGAT CTTCACATCG 
    TTCTGAAGCT ACAAGGCTTA TCTTTCTAAC GAATCCAGCC TTGCCTCAAT 
    TGGTTATGTC TAGCAAGAGT TCTTACTGTT TTTCTGCGAC AAGCGCGTCC 
    TAGCTGTAGC CCTCAGATGC AGGTCTGCGG TTTTCGGATC AGCCACCTTT 
    GTGACCGATT TTCTGGCGAA CTACAAGTAA CTACGAAACG TTCAACATAT 
    CAACGGAAAG CCCCGAGGCT TATCTTTATA TAGAGACCAA TCTCGTCTCT 
    ATCGTTGAAC TCCTTCTAGG TTGAAGAACC CGCTACATCG CACTACTACC 
    ATGCTTGGAT CGTGTCATTG TTATTCTCAC TTAAGATCAC CAACTTAGAG 
    TTCACCACTA GTCAGTTGAC AGTTCGCCTT TCAATAACGT CCATCGTCGT 
    TTCCATGACG ATTCCACCAA CAGGCTCATC TTAGGCTTCA CGTCTTCACC 
    TCGCCACCGA TGGTCTTCAA TTTACAAAAG CTTCACGTCA T

AT4G20520.1

Model type
Protein coding
Short Description
RNA binding;RNA-directed DNA polymerases
Computational Description
RNA binding;RNA-directed DNA polymerases; FUNCTIONS IN: RNA binding, RNA-directed DNA polymerase activity; INVOLVED IN: RNA-dependent DNA replication; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA-directed DNA polymerase (reverse transcriptase) (InterPro:IPR000477), Protein of unknown function DUF1204 (InterPro:IPR009596), RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1204) (TAIR:AT4G20700.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G20725.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 1.2e-31 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)
Link
InterPro Scan - TAIR

AT5G10330.1

Model type
Protein coding
Short Description
histidinol phosphate aminotransferase 1
Curator Summary
Encodes histidinol-phosphate aminotransferase that catalyzes the eighth step in histidine biosynthesis. Loss of function mutations are embryo lethal.
Computational Description
histidinol phosphate aminotransferase 1 (HPA1); FUNCTIONS IN: histidinol-phosphate transaminase activity; INVOLVED IN: histidine biosynthetic process, embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: stem, fruit, root, flower; CONTAINS InterPro DOMAIN/s: Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Histidinol-phosphate aminotransferase (InterPro:IPR005861), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: HISTIDINE BIOSYNTHESIS 6B (TAIR:AT1G71920.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR