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GT13942

CSHL Arabidopsis genetrap mutant lines

Original: GT13942

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13942

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3108306 [Map]; Strand: w
      • AT3G10080.1 - [+] show detail - RmlC-like cupins superfamily protein
        Distance: -129; Region: promoter
    Flanking Genome Sequence: GT13942 - 5-prime edge 
    AATGAGAGAC TGGTTAAGAT GGTTACTTTT TATCAACCAA AATTTCGTCT 
    GTGAAATTAA GGTGTGGGTT TTTGTACCAA ATGAAAAACC ACGTTTGGAT 
    ATGTGGTTTT GGTTATGGGA GTGGTTAGGC CGGTACATTG ACTGATAAAC 
    CCCTTTTGTG GCTTGATTGA CACATCTCTT ATGAATTTAC TATTCGTCTA 
    TGTAATTCAT AGTTACAAAT TAATACAATT GTGCATAAAA ATGGAAATAT 
    AACTGGACGT CCAAGGTTTC GGATCCTAGT GTCAATCCCG GTTTATAATG 
    TAATTTTGGT ATAGGCATAA CCAAATCTAT GTCTTGGGCT GAAGCAGGGG 
    CCCGTATAAG GCGTGCTGTG TGCGCATGCC ATGATATTCA AAATGATGAA 
    TTTGTTGCTT AAGCTTTTTG TTATCTCCAA GGCATGATTA GAGAGGCACA 
    TGAACATCAT TTTTTCGGTG GTAAAGGTTT AGGCAGAGTG TGAAACATGA 
    CTTATTTCTT TGATATAACA AAGTGAAGAT AAAGAAATGA TTTTTAATAT 
    AATATAGATT TAGAGTCTAA AGCATCAATC TTTGATAATT AAATTTTTTA 
    ACATCATAAT AAGAATTTAA TTATCCAAAC GATATAACAT TTGTTCTTCA 
    AAGCAACCAA AAACAATTTG CAAAGAGAAT CAACGAAGTC TTCTAGCTTC 
    TCTCTCGGAC TCCAGCAAGG TGAGAATATC TCCCTCTC

AT3G10080.1

Model type
Protein coding
Short Description
RmlC-like cupins superfamily protein
Computational Description
RmlC-like cupins superfamily protein; FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929); BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT1G18980.1); Has 1595 Blast hits to 1591 proteins in 125 species: Archae - 0; Bacteria - 59; Metazoa - 0; Fungi - 57; Plants - 1448; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).
Link
InterPro Scan - TAIR