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GT13886

CSHL Arabidopsis genetrap mutant lines

Original: GT13886

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13886

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 25295070 [Map]; Strand: w
      • AT1G67500.1 - [+] show detail - recovery protein 3
        Distance: 0; Region: exon9 (CDS)
      • AT1G67500.2 - [+] show detail - recovery protein 3
        Distance: 0; Region: exon9 (CDS)
    Flanking Genome Sequence: GT13886 - 3-prime edge 
    ACAGTTTGTC TGCATTTCAA TACTGAAGTT TCTGTGGATT TTCTTCTATA 
    GGTTGATTAT AATTTGTATG GAATGGGTCA TGTGCATATA TCAAAGATGA 
    AGTTCCGTAG CCCAGTGCCT CACCATTTCC GGCCAAGGAG ATTTGATTTG 
    GATGATTGTC CGGGACAAAG GATTGACGAA GTGGCTATTA CAAAGGGAGA 
    TCTTCAAATA CTTGATGCTT TGCGTTATAT TGTGTGGTAG GTTTATCTTC 
    TTTTATATCA CAATACTGAA ACAATGTAAC AGGCAAATTC AAGTGCTGCT 
    GCAAGTGTCA GTTTTCCTGT TTGGAGCTTG TCAACAATCC CAGGTCAGTG 
    GATGTGGAAT CTCTCTGAAG AATCTGATAC ACCGTTGAGC CAGAACCAGC 
    ATAGGCACCA ACACCATTAC AGACCTCAGA GTCTCTGTGA ACTTGAGGGA 
    GATGCTACTA TTAGTGGGAA TTTTCCTGAT TCGAAATTGA ATTGTTTGTG 
    TATCATGTAT GACCGGACGT TTGAACTAGC CTCTTCTCTT GTAGATATTC 
    TCAATCAACA GTTTAAA

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 15551039 [Map]; Strand: w
      • AT4G32200.1 - [+] show detail - DNA-binding HORMA family protein
        Distance: 0; Region: exon9 (CDS)
    Flanking Genome Sequence: GT13886 - 5-prime edge 
    CTGCTGACAG TGCTTCCTTA AGATTTCAGG CTTGGCAGGA AGCATATTTG 
    CGTGGGCTGT TGGTTTCTGT CTCTTTTCTG CTCAGATTGG ACATGTCTTC 
    GTTCAGCCTA AGACCAGAAG TTCTGAGTCA AAGCCAAAAG TCACCATGGA 
    AGAACTAGGT ACGTAAAAAA TAGATGTTGA TTTGGTTTAT TTCTGTGTAT 
    ATTATGAATC GGAGCATGTG TATGTTATAA AATGGTTGTT GATTTGGACA 
    TTTCTTCATG GAAGAAGAGA AGTTGACCCC TCCAAGTTCT GAACCGAAGT 
    CGGCCCCTCC AAGTTCTGAA CCGAAGTCGG CCCCTCCAAG TTCTGAACCA 
    CTAGGTACGT AAAAGAATGT TTTTTGTCTC TCTCTTTGTT GATTTGGTTT 
    ATTTCTGTGA ATATCTATGA ATCGGAGCAT GTGTATGTTA TTGCCTAGTT 
    GAATTTCTGG AGTTGATGAT GGTAAAGAGA GACAAAAAAA GTGGCAGAGA 
    AGTCAAATAA ATCAAAGGAG AAATCTCCAA CGGAGGAGTC TTCTTCAACC 
    ACCCCAAAAC CAGAGAAATT GGCTGTTATC AGAAGGATCC TTCCTGAGAT 
    ATTTGCTCAA CGATGTGGTC AAAGAAACAG TAGCTTTGAG GCATTTGCTC 
    AACGTCGGAC GACATATGAT TATTACAACA TCAGGTAATT AGAAAATCAT 
    GATTATTCAT TTTGTCTTAT ATCTTATAAT AGTCACTAAT AAATATCTGA 
    TTTTTACAAA ATATTTTTAT GGTGAAAGAA ACATCTGATG GTAGCAATGA 
    GGGCCTACAA CCAACTTCTT CAAGAATCTG GTGGAGCTAG TTGTGTCATG

AT1G67500.1

Model type
Protein coding
Short Description
recovery protein 3
Curator Summary
Encodes the catalytic subunit of DNA polymerase zeta.Mutants are sensitive to UV-B radiation. Gene is involved in damage-tolerance mechanisms through translesion synthesis(TLS).
Computational Description
recovery protein 3 (REV3); CONTAINS InterPro DOMAIN/s: DNA polymerase, family B (InterPro:IPR022762), DNA-directed DNA polymerase, family B, exonuclease domain (InterPro:IPR006133), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), DNA-directed DNA polymerase, family B, conserved site (InterPro:IPR017964), DNA-directed DNA polymerase, family B (InterPro:IPR006172), DNA-directed DNA polymerase, family B, conserved region (InterPro:IPR006134); BEST Arabidopsis thaliana protein match is: DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases (TAIR:AT5G63960.1); Has 6179 Blast hits to 5524 proteins in 1389 species: Archae - 386; Bacteria - 883; Metazoa - 612; Fungi - 614; Plants - 201; Viruses - 2029; Other Eukaryotes - 1454 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G67500.2

Model type
Protein coding
Short Description
recovery protein 3
Curator Summary
Encodes the catalytic subunit of DNA polymerase zeta.Mutants are sensitive to UV-B radiation. Gene is involved in damage-tolerance mechanisms through translesion synthesis(TLS).
Computational Description
recovery protein 3 (REV3); CONTAINS InterPro DOMAIN/s: DNA polymerase, family B (InterPro:IPR022762), DNA-directed DNA polymerase, family B, exonuclease domain (InterPro:IPR006133), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), DNA-directed DNA polymerase, family B, conserved site (InterPro:IPR017964), DNA-directed DNA polymerase, family B (InterPro:IPR006172), DNA-directed DNA polymerase, family B, conserved region (InterPro:IPR006134); BEST Arabidopsis thaliana protein match is: DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases (TAIR:AT5G63960.1).
Link
InterPro Scan - TAIR

AT4G32200.1

Model type
Protein coding
Short Description
DNA-binding HORMA family protein
Curator Summary
meiotic asynaptic mutant 2, homologue of ASY1
Computational Description
ASY2; FUNCTIONS IN: DNA binding; INVOLVED IN: synaptonemal complex assembly; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: DNA-binding HORMA (InterPro:IPR003511); BEST Arabidopsis thaliana protein match is: DNA-binding HORMA family protein (TAIR:AT1G67370.1); Has 963 Blast hits to 893 proteins in 304 species: Archae - 15; Bacteria - 206; Metazoa - 200; Fungi - 133; Plants - 165; Viruses - 16; Other Eukaryotes - 228 (source: NCBI BLink).
Link
InterPro Scan - TAIR