1. Home
  2. Mutant Lines
  3. GT13851

GT13851

CSHL Arabidopsis genetrap mutant lines

Original: GT13851

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13851

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 19327927 [Map]; Strand: w
      • AT3G52115.1 - [+] show detail - gamma response gene 1
        Distance: 0; Region: exon2 (CDS)
      • AT3G52120.1 - [+] show detail - SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-pa...
        Distance: -784; Region: promoter
      • AT3G52120.2 - [+] show detail - SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-pa...
        Distance: -784; Region: promoter
    Flanking Genome Sequence: GT13851 - 5-prime edge 
    TTTCTCCCTG ATTGAGATGT CAAAAGGGTC GCTGGGGAAG AAAAACATGT 
    TCATGATGTT GCTAAGAAAG ATGATTCAGA CGACGAGACA CAGGACATGA 
    ATCCTAAACC GAGTCCATCA CGACAGCGAA TTCAAATTGC AGAAACGAGT 
    AAAAAGAGTT TCAAGCATGT GGAGTCAGTG AGGAAAAAAG CCGAGAGGGA 
    GAATTTGAAA GGTATAGAAT GTAAACAATG CAAGAAATTC TATGATGCTG 
    TTCATCCTGA GAATGAAGGA AATGGTAACA AAAGCTTGAG ATGTGAACAT 
    CATGAAGGTG TGTCGAGGCA TCGTTACAGA TACGCTCCTC CAATGACTCC 
    TGAAGGGTTT TGGAACATCG GGTTTGAATC CGAAATGTAA TTCTGTATCT 
    TGACATTCTT TGCATCTACG TTCTTTGGAT CGAAAGACTA TACAATAAAG 
    TTTTTCTCTG CTTTCTCGAA GAAAATGTCA ACTAAAACTC TTGTGATAAG 
    TTATTTATCA ATGATTTAAA GTCAATTCCC TATGCTTTTG TGATCTTCAA 
    GATACAATAC AAACACATTC ATGCTACTAA GATACTAACT TCAAATCTTG 
    GCAGATATCA GCTATAACTA TATCAATATG AACTGTTTAC GCATGAATCA 
    ATCATACAAA CACAAAAAGC ATAGGAAATT AATCATGCGG TCTAGAAAAA 
    TGTGTAAATA CAAACAAATA TGGGGGGGGG ATTTATTTTA GAAACATTCG 
    GGCTCTTTAT GTAAATACAA GAAAATTATG TGTCCAACTG AAAAACAACA 
    AACAAATATG GGCCTCCTTT ACGTGTTATA TATT

AT3G52115.1

Model type
Protein coding
Short Description
gamma response gene 1
Curator Summary
Induced in response to ionizing radiation, shows basal expression in mitotically active cells and high expression in endoreduplicating cells. May be involved in DNA damage-induced growth arrest. Protein sequence contains a PEST destruction box.
Computational Description
gamma response gene 1 (GR1); INVOLVED IN: meiotic DNA double-strand break processing, response to DNA damage stimulus, gamete generation, response to ionizing radiation; EXPRESSED IN: bud, cultured cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: DNA repair protein Sae2/CtIP (InterPro:IPR013882); Has 26568 Blast hits to 17186 proteins in 1344 species: Archae - 485; Bacteria - 2739; Metazoa - 14510; Fungi - 2010; Plants - 1072; Viruses - 86; Other Eukaryotes - 5666 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G52120.1

Model type
Protein coding
Short Description
SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein
Computational Description
SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: RNA processing; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: SWAP/Surp (InterPro:IPR000061), D111/G-patch (InterPro:IPR000467); Has 1460 Blast hits to 1340 proteins in 171 species: Archae - 0; Bacteria - 0; Metazoa - 1005; Fungi - 124; Plants - 274; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G52120.2

Model type
Protein coding
Short Description
SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein
Computational Description
SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: RNA processing; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: SWAP/Surp (InterPro:IPR000061), D111/G-patch (InterPro:IPR000467); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR