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GT13781

CSHL Arabidopsis genetrap mutant lines

Original: GT13781

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13781

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 14779687 [Map]; Strand: c
      • AT3G42711.1 - [+] show detail - transposable element gene
        Distance: -2585; Region: intergenic
      • AT3G42712.1 - [+] show detail - transposable element gene
        Distance: 640; Region: intergenic
    Flanking Genome Sequence: GT13781 - 3-prime edge
    AACGGTAGAG GTTTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTACCTG 
    TATGTTGATT GTCCTTTGCC ATATTCACTG CCATCGAATT GGAGCTGTCA
    TCACCGAGAT ACAATCTATC TCTTGGCGAG TGAACACGAA AAGCTAAATG
    TAACGAGTGA GAACGATGGT CACTCTTCAT TTTTCTTTTT CGAACCTTGT
    GGTAGCTTCG TTTGACATGA ATTTTCTAAC TCCCAAATTT CTCCTTGCCA
    AAAGAGTATA CGAAAGCTTG CATCGATGAA TAATCTTACT CTCTATGTTC
    TGAATCCGTG CATCCACAAG CTCAAAACGA TGTTGAGTCT GCTTGATTAG
    TCCCAAATCT TCGTCGTGCG AATCCTTTTT CGAATTTTCT GTTGAAGGAT
    GCACCAACGA AAGTTCCTGT TTTTGGCCCG CCAGTTGCTC GACGAAATTC
    CCAACAGAGT TTGCAGGTTT CTTCTGGGTT TGTTGAAGCT CAGCGGCTTC
    CCTTTCTTGT TTCAGAATCA CTTTATTCTC ACGGATGTTG CAGAGCATCG
    CATCCAGTCA GTCACGCATC TGAAGCAGAA GATTGACGCT TTCTTGAGTT
    AACATAAACA TTTTCACTAG TCGAGAAGGT CGACATTCTC AATGAAAAGC
    AACAATGATA AGCCCCTGGA GCTTATCTGA
  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 4228343 [Map]; Strand: w
      • AT2G10735.1 - [+] show detail - pseudogene, hypothetical protein
        Distance: -1837; Region: intergenic
      • AT2G10760.1 - [+] show detail - transposable element gene
        Distance: -3210; Region: intergenic
    Flanking Genome Sequence: GT13781 - 5-prime edge
    CTTTCTCCCT GCATACAGGA ACTCGGAGGG CTCGTTTCAA GCAACGTTTC 
    CACCAATTTC AGAAACGAAG AGATAGGGAT AGATATCGGT TGATGATAGC
    TTCATTTAGA TCAAAGCATA GATCATGGGT GGTTGCAAAG AAAAAGGAGA
    AAATCAGCTC TCATACATTC TCGTTTCCTC CTCTCGGACA ATTGGCTGTG
    AGTGATGATG AGTGTTACAG GGGAGATAGC TTGGTGATGA TTCCACAAAA
    GGCTAGTGAA CTGAGTTTAC TAGAAGGTGC AGGAACGCTT CTTACTACAG
    TGAATGAAAG AAGTGACGGG ATTTTTTATG CAAGGAAGAT TCAAGGTACA
    GACAAGAAAC AAATTACTGG TTCATCTCCA CTCGAC

AT2G10735.1

Model type
Pseudogene
Computational Description
pseudogene, hypothetical protein
Link
InterPro Scan - TAIR

AT2G10760.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 6.5e-285 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT3G42711.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
Mutator-like transposase family, has a 4.7e-08 P-value blast match to GB:AAA21566 mudrA of transposon="MuDR" (MuDr-element) (Zea mays)
Link
InterPro Scan - TAIR

AT3G42712.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
Mutator-like transposase family, has a 1.6e-81 P-value blast match to Q9ZQM3 /24-192 Pfam PF03108 MuDR family transposase (MuDr-element domain)
Link
InterPro Scan - TAIR