1. Home
  2. Mutant Lines
  3. GT13636

GT13636

CSHL Arabidopsis genetrap mutant lines

Original: GT13636

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13636

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2856120 [Map]; Strand: w
      • AT1G08910.1 - [+] show detail - zinc ion binding;zinc ion binding
        Distance: -107; Region: promoter
    Flanking Genome Sequence: GT13636 - 3-prime edge 
    AAACGGTAGA GGATTTTACC GACCGTTACC GACCGTTTTC ATCCCGACCC 
    ACGACAAACA CAGCCGCTTG AGAGTAGCTT GTCGCCTTTT ATACTTGGCA 
    GTTTACTTGT TTCTTTATTT TACAACTCGG TCCTTCAGAT TCTGATAGTT 
    TTTACTAAGT CCCCTTCTAC TTTCTACTGT AGTCTTTTTG ATTCTTTTTC 
    TCCCACTCGT TTTTGTTGTA GGCATTTATG ATTGGACAAT TCATAATTTT 
    AATTAATCAT AACAGAACGT TAATCTCTCT ACATTAGCCT GCCTGCGACG 
    GCTCATCTCC CTTACTTTAA CGTTTACACT TTAATATGTG TCACTCTAAT 
    CAAGATTAGA GCTCACAAAT CACAGTTTTC AAATATTAAA TCCTATAGGT 
    AAAATCATAG CCATTATTAC TATTTAATCA AAGTGAGAGA AAACGCTTAT 
    TTAACCAAAC ATTAATATAC GGTTAAAAAG ACTATTCTTT TCTTTTCTTT 
    TTGACAGCGG TTAAAAAGAC TATTCAAGAG ACTTAACATT ACGTATAATC 
    CATACTTAGA TTTTACGAAA GTCGGACTAA TGATGTTTGA ATCTCTTCGA 
    GTGTTCGGCC TTTCGTCTCA GGCACCAATG TCCATATGAA TACGATCGTC 
    ACCAGAGAAA CTCCAGAAAA TATGAAATAT GTTCCTATAA ATCCAACAAA 
    CCAAAATTAA CTATATAAAT

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2856234 [Map]; Strand: w
      • AT1G08910.1 - [+] show detail - zinc ion binding;zinc ion binding
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT13636 - 5-prime edge 
    CCTACTTTCT CCCTGGGTTT ATAATCATTA TCTCCCCCGG AAACTTCTCG 
    GAGAAGGAGA AGATGGTTAT TCCGGCGACT TCTAGGTCTT TTTTTCATCT 
    CACTCGACTA AATATCAAGC AAGCTGTCTC TATCATTTGA CTATTGATTT 
    TCTTACTTAG TTTTTAAGTA ATATCAAATT AATTGTTTAA TACAGTTATA 
    GTTTCTATAT AAAAATGGGT TCAACTAAAC ATTCTTCTTC TAATTACGTC 
    TGCTAGGTTT GGGTTTCGTG CTGAATTCAA CACCAAGGAG TTTCAAGCTT 
    CCTTC

AT1G08910.1

Model type
Protein coding
Short Description
zinc ion binding;zinc ion binding
Computational Description
embryo defective 3001 (EMB3001); FUNCTIONS IN: zinc ion binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, MIZ-type (InterPro:IPR004181); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G41580.1); Has 1002 Blast hits to 979 proteins in 199 species: Archae - 0; Bacteria - 25; Metazoa - 593; Fungi - 182; Plants - 101; Viruses - 6; Other Eukaryotes - 95 (source: NCBI BLink).
Link
InterPro Scan - TAIR