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GT13567

CSHL Arabidopsis genetrap mutant lines

Original: GT13567

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13567

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 76797 [Map]; Strand: w
      • AT4G00180.2 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: -1413; Region: intergenic
      • AT4G00190.1 - [+] show detail - pectin methylesterase 38
        Distance: 3636; Region: intergenic
    Flanking Genome Sequence: GT13567 - 3-prime edge 
    AAACGGTAGA GGTATTTTAC CGACCGTTAT CCACCGTTTT CATCCCTAGG 
    TCCTGTATTA TGGAATTTAG CGAAACCACA CACTTGCGGG TAAAAATAAT 
    GATGACAAAA TGATATACAT TGGAATGTAG AGAAAGTATA TACAAATACT 
    AATAAATAGA AAAGGGCATG GAATTGACGA GGATCGAGGG AAAGTGTGGT 
    GTGGCAGAAA TGTTATTAAG TGTGAAAACA ACTGATGAAT GAGCCTTTGC 
    TTAATCACTT CCATGCACAA GTCCCTTTCC TCTTCTCTCC ACTCGACCAT 
    AATCNAACTT TGCGACCTTT ANAGAAAAGA AAAGAAAAAA TATTTTTCAT 
    CCAATTGAAT TCAAACCGTA ACCACATTAG ATTTAACTTC GTTTATTTTA 
    CATTATCTTC TTCTTCTTAT TTTGCGGAGA AGACTTGTAC GATGACCTCA 
    ATACGCTGAA GAGTTGGATT CACTGCGAGT GTATATGTGC ATGTAGAAAC 
    AAAATATCTA GCTATATGAC CACTTTTAAC TCTAAATATG GGTGTAATAT 
    GCCAAGGACT TTCTGGAGAT CCACCACAAC AACATTCAAG TTCAAGTTCT 
    GCTGCTTTTA CGTCTATGAA AACAACACCA ACCTTATTTT CATATTGTTC 
    TCTCTTTATC TCATGCATAA GTATATTTTC ATATTGTTCC CTCTTTATTT 
    TCATGCTTTT AGTTGATATT TTTTTTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 2335339 [Map]; Strand: w
      • AT4G04630.1 - [+] show detail - Protein of unknown function, DUF584
        Distance: -2539; Region: intergenic
      • AT4G04632.1 - [+] show detail - Protein kinase superfamily protein
        Distance: 4247; Region: intergenic
    Flanking Genome Sequence: GT13567 - 5-prime edge 
    TTCAGATGTG GAACTATGGC CCAAACACGC CCCCTCGAGA GGATAGCTCT 
    TCTAGCCATT GATCTCGATA TGTTTGGGCA TGGATCGGCG GGCCAAGTAT 
    TGGGCCGGAC CGATGTGGAT CGGGTTGAGT ATGTGCGGAT CGGGCTCTGA 
    TACCATATTA GAGTGTGGGC TTCCAACCTA AAACCAATTG GCAATAGGTG 
    AAGAGGCTCA TATCTTATAT ATACCACTTA AGATCCTATT CAACTTCCGA 
    T

AT4G00180.2

Model type
Protein coding
Short Description
Plant-specific transcription factor YABBY family protein
Curator Summary
YABBY gene family member, likely has transcription factor activity, involved in specifying abaxial cell fate. Along with FIL, involved in patterning of the fruit. GUS reporter gene expression in seedlings is observed in the young leaves and as the leaf matures, expression is restricted to the abaxial tissues of leaves, expression is also observed on either side of the leaf margin in the younger tissues of leaf blades.
Computational Description
YABBY3 (YAB3); FUNCTIONS IN: protein binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: fruit development, abaxial cell fate specification, regulation of transcription; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: Plant-specific transcription factor YABBY family protein (TAIR:AT2G45190.1); Has 465 Blast hits to 465 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 6; Plants - 438; Viruses - 2; Other Eukaryotes - 15 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00190.1

Model type
Protein coding
Short Description
pectin methylesterase 38
Computational Description
pectin methylesterase 38 (PME38); FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: flower, synergid; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT2G45220.1); Has 2963 Blast hits to 2921 proteins in 467 species: Archae - 10; Bacteria - 871; Metazoa - 1; Fungi - 198; Plants - 1837; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G04630.1

Model type
Protein coding
Short Description
Protein of unknown function, DUF584
Computational Description
Protein of unknown function, DUF584; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF584 (InterPro:IPR007608); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF584 (TAIR:AT4G21970.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G04632.1

Model type
Protein coding
Short Description
Protein kinase superfamily protein
Computational Description
Protein kinase superfamily protein; FUNCTIONS IN: protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT3G45670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR