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GT13422

CSHL Arabidopsis genetrap mutant lines

Original: GT13422

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13422

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 125247 [Map]; Strand: c
      • AT4G00290.1 - [+] show detail - Mechanosensitive ion channel protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT13422 - 3-prime edge 
    CGGTAGAGGA TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTAGTGGCA 
    TGAGGTTTTA TTGATCTTTG AATTGACTTG AGAAGCGATA ACCTAACTCC 
    GGCCATTGAT CTACAAATCA AAATCAAAAA TCAGGATTTA GAAGTCTTAA 
    TCACATTCTT AACCAATTGA AGAAGAACAC AGTGTTCACT AATTAAGAGC 
    TTCCTAGAGT TTCGATAATG GCGGACCAGA TCAAAAATTG AAGTCAATGG 
    AATTTAAAGA AATCAGAGAA CTTGTATATT ACCTGGAGAG ACTTGAAGAT 
    AACTAGATTC TTAGCCAAAA TTCTCGCTGA GAGATAAAGA AAGAATTCTA 
    AATTTTGCTT GGCAAAGAGG GAAAGAAGAT GAAGAAGAAG AAGACACAGG 
    TTTATTTCGT CAACTCTGCT TCTTATTCGG TAACATCGAC GTCGTTTTAG 
    TCACCTANTT TTTCCTGGGA CTATTGGGCC TAATGATTCA AATTTGTTGG 
    GCTTAATGCA AGTTTGATTA ATTTGGTGCA AAACCTTATT AAGAAACACA 
    CACACACAAA GTTGTGAATT TGTGAATTTA CTTAACTACG TACATATATA 
    TAATCA

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 100880 [Map]; Strand: w
      • AT4G00232.1 - [+] show detail - DNA-binding storekeeper protein-related transcriptional regulator
        Distance: -159; Region: promoter
      • AT4G00234.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: Mechanosensitive ion channel prot...
        Distance: -39; Region: promoter
    Flanking Genome Sequence: GT13422 - 5-prime edge 
    TCCACTTTAT CCCTGCTGCC ACTGCAAAAT CGTGTTCTGG TCTCCTAAAC 
    TCTCATGCCA GGGCCTTTAC TTGCGGAAAC CTTCTTGATG GACCAAAAGC 
    TTCTCCTTCG ATGGTCTCCT TTTCATCGAA TATACGCCTG CAAAATGCTA 
    AGCCTTTCAA TTACTTAAGC CATTCGTCGT ACGCACGAGC TTTCAGCTCC 
    AAATCTGATG ATTTCGGAAG TATTGTAGCC TCTGGTGTTA CTGGCTCTGG 
    TGATGGGAAT GGGAATGATT GGGTTGAGAA AGCTAAAGAT GTGGTGCAGA 
    CTAGTGTCAA TGCTGTTACT GAGACTGCAA AGAAGACTAA AGATGTCTCT 
    GATGAGATGA TTCCTCATGT TCAGCAGTTC CTTGACTCTA ACCCTTATCT 
    TAAAGATGTT ATAGTTCCTG TTAGTCTCAC TATGACAGGT ACTTTATTTG 
    CTTGGGTTGT GATGCCTAGG ATTCTTAGAA GGTTTCACAC TTATGCTATG 
    CAAAGTTCCG CTAAGCTGCT TCCCGTTGGC TTCTCTAACG AAGATGTTCC 
    TTATGAGAAA AGCTTTTGGG GAGCTTTAGA GGATCCTGCT CGTTACTTGG 
    TCACCTTCAT TGCTTTTGCA CAAATGTGAG TCTCTCTAGC TTTATTCCTT 
    TGACATGTAT GTTGTAGAAA ATAGATAGAC TTGATGAATG TGATATGCTG 
    CAGTGCTGCA ATGGTGGCGC CAACAACTAT AGCAGCTCAA TACTTTTCCC 
    CGACTGTGAA GGGAGCG

AT4G00232.1

Model type
Protein coding
Short Description
DNA-binding storekeeper protein-related transcriptional regulator
Computational Description
DNA-binding storekeeper protein-related transcriptional regulator; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF573 (InterPro:IPR007592); BEST Arabidopsis thaliana protein match is: DNA-binding storekeeper protein-related transcriptional regulator (TAIR:AT5G41765.1); Has 109 Blast hits to 109 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 108; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00234.1

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: Mechanosensitive ion channel protein (TAIR:AT4G00290.1); Has 57 Blast hits to 57 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00290.1

Model type
Protein coding
Short Description
Mechanosensitive ion channel protein
Computational Description
Mechanosensitive ion channel protein; INVOLVED IN: transmembrane transport; LOCATED IN: chloroplast, membrane, chloroplast envelope; CONTAINS InterPro DOMAIN/s: Mechanosensitive ion channel MscS, transmembrane-2 (InterPro:IPR011014), Mechanosensitive ion channel MscS (InterPro:IPR006685), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G00234.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR