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GT13413

CSHL Arabidopsis genetrap mutant lines

Original: GT13413

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13413

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3121136 [Map]; Strand: w
      • AT3G10114.1 - [+] show detail
        Distance: 1111; Region: intergenic
      • AT3G10116.1 - [+] show detail - COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
        Distance: -4887; Region: intergenic
    Flanking Genome Sequence: GT13413 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CTGTGTTCTC ACTTTGTGTA 
    CTATCATAGT GTACGCATTT GGTGTACTAG TCTAGTGTAC TACTGGTGTA 
    CTGTTCTAGT GTTCTCACTT GGTGTACTAT TATAGTGTAC CCATTTGGTG 
    TACTATTCTA GTCTACTTCT AGAATGTCAA AGTATCAATC CAAATTATAA 
    TACAATATAT TTCAATTCAA GTGTTATGAA GCATAATAAT AATCTAGGGT 
    TATGATTTTG AATTAGGAAT TTATTTATTT ACTTGGAATT CTAAATTCTA 
    GTAATCTAAG GCTTTAGGGT ATAGTTTTAA ACTTCATTCC ATATGATATA 
    TGGTTTTCCT TGGGTTTAGT CTTCTCTCTT TGTCTTTTAG TGTATAGTTT 
    TGAATTTCAC TACATTTCAA TAATGTCTTT TAGTGTATAG TTTTAGGGTA 
    TAGTTTTTAA TTCCATTGCA TTTCCTAAAT GTTTTTAGTA TAATAGTAGA 
    CTGTCTAGTG CACCAAAGTG GTGTACTGTT TTTAATTCAC TTGGTTACTA 
    ATTGGTGTAC CCATTTGGTG TACTATTCTA GTCTACTATT ATATTCTATC 
    TTGGCTAGTG TACTAGTGGT GTACTGTTCT AGTGTTCTCA CTTGGTGTAC 
    TATTATAGTG TACCCATTTG GTGTACTGGG TTTCTCTCAA ACGTCTCTCT 
    TCTCGAACTC GTTCACCCTC GATTTGTTGT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3121213 [Map]; Strand: w
      • AT3G10114.1 - [+] show detail
        Distance: 1188; Region: intergenic
      • AT3G10116.1 - [+] show detail - COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
        Distance: -4810; Region: intergenic
    Flanking Genome Sequence: GT13413 - 5-prime edge 
    CTTTATCCCT TGAACCTAGA AAGTACACCA CTTCGGTACA CTAGACTAGT 
    ACACTAGCCA AGATAGAATA CTAAAAACAT TTAGGAAATG CAATGGAATT 
    AAAAACTATA CCCTAAAATC CAAGATAGAT TACTAAACCC CAAGGAAATG 
    AAGAGGTCGG AGAACATGAT GCGATATCGG ATGAAGAGGT CGAGTGACTG 
    GCTCTCCCGG GGATCGACGT TGTCGTTTTG CTTCCAGAGC CTGACGAGTC 
    GGTATCGAAT GCTCCATGTA GTCCGTTTGT TGTCACTTTG GTTCGTCGCA 
    GGTTCGTAGT TTTGAGAGAT ATCTTCGAGC TATCCCCCTA CCTGGCGCGC 
    CAACTGTTGA TGCACGAATC ACACAAGTAC GAAAATGGGA TCTCTAGGGA 
    AGGAAGAAGA ATCTTTCTAT TAATGACGAG CCCGCGACTT AGGCGAATTG 
    GACGAATTAC AAAGGATGAT TTCGTCAACG AGCATAAATG GAGTAAGAAC 
    GAGCCGATTG TAGATGAAAG ACGAGCTTGA GGCCGGAAGA CGATCTTGAT 
    GTCCGAGGAA GAATAGAGTT TATTCGTTTT ATAGCTGAAC CTTGTAAAAG 
    GTTGCCTACG TACCCTTAGA AAGGGATCAA GCCACACGTA GTTCATATTA 
    GAATAAGTGA GCTAGGCCAT CGTTGGAGGT AGGTCGGCAG GTAGGTGACG 
    AGCCGGCAGA TGTGCGATGA GCTGGATGAA CCGTGGTAGA GAGACGAGTT 
    GGACAAACCG AGTTGTTTGC TGAAGGTCTA GACGAGCTGG ACGACGAGAT 
    AGGTGGACTA TGCAGTCAAT GGACGAACTG CCGCTAGGCG AGGAGGTAGA 
    TGAGTTTCGC AGTCGAGGGA TGAGCTGATA GCT

AT3G10114.1

Model type
Pseudogene
Curator Summary
pseudogene of glycosyl hydrolase family 81 protein
Link
InterPro Scan - TAIR

AT3G10116.1

Model type
Protein coding
Short Description
COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
Computational Description
COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family; CONTAINS InterPro DOMAIN/s: Glycosyl-phosphatidyl inositol-anchored, plant (InterPro:IPR006918); Has 64 Blast hits to 64 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR