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GT13301

CSHL Arabidopsis genetrap mutant lines

Original: GT13301

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile (unconfirmed)
Anatomical entity
/structure development stage
Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT13301

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2204715 [Map]; Strand: c
      • AT1G07180.1 - [+] show detail - alternative NAD(P)H dehydrogenase 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT13301 - 5-prime edge
    CCTACTTTCT CCCTGCCACG CAAGTAGAAG CCAAGAGAGG AGTGAAGACC 
    ATGTGGTTCC TAGGAGAGAC ACAAACGACG TCGTAAATAC TAGTATCGAT
    CCCTTTTAAT ACCCGACAAC CCGCCCAACC CGACCCGAGA ACCAAAACTC
    TCGGCTTCTC TCCCTCTTTC GTCGGAGCCA AACCGTCGTA ACGTTGTGGC
    TCCAACGCAT TAACTACATC CTCCTTTGCT TGAACCGTGT CGGTTACTTG
    TTGCTTTTGC AGAGCGGTGC AGAAACGGGA CGAGAGAGTG TAGGATTCGG
    GGTTTCTGAA CACGTTTCCG ACAGACGAAG AAGTGGTCTG CGAGATTCTT
    GCTAGGTTTT TGATCCAAAA CATGATTCTT TAGGTACTCT

AT1G07180.1

Model type
Protein coding
Short Description
alternative NAD(P)H dehydrogenase 1
Curator Summary
Internal NAD(P)H dehydrogenase in mitochondria. The predicted protein sequence has high homology with other designated NAD(P)H DHs from microorganisms; the capacity for matrix NAD(P)H oxidation via the rotenone-insensitive pathway is significantly reduced in the Atndi1 mutant plant line; the in vitro translation product of AtNDI1 is imported into isolated mitochondria and located on the inside of the inner membrane.
Computational Description
alternative NAD(P)H dehydrogenase 1 (NDA1); FUNCTIONS IN: NADH dehydrogenase activity; INVOLVED IN: oxidation reduction; LOCATED IN: intrinsic to mitochondrial inner membrane, mitochondrion; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region (InterPro:IPR001327); BEST Arabidopsis thaliana protein match is: alternative NAD(P)H dehydrogenase 2 (TAIR:AT2G29990.1); Has 9792 Blast hits to 9601 proteins in 2135 species: Archae - 248; Bacteria - 7524; Metazoa - 53; Fungi - 647; Plants - 379; Viruses - 0; Other Eukaryotes - 941 (source: NCBI BLink).
Link
InterPro Scan - TAIR