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GT13272

CSHL Arabidopsis genetrap mutant lines

Original: GT13272

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13272

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1398877 [Map]; Strand: w
      • AT1G04930.2 - [+] show detail - hydroxyproline-rich glycoprotein family protein
        Distance: 0; Region: exon1 (CDS)
      • AT1G04930.1 - [+] show detail - hydroxyproline-rich glycoprotein family protein
        Distance: 0; Region: exon1 (CDS)
      • AT1G04945.3 - [+] show detail - HIT-type Zinc finger family protein
        Distance: -297; Region: promoter
      • AT1G04940.1 - [+] show detail - translocon at the inner envelope membrane of chloroplasts 20
        Distance: -305; Region: promoter
    Flanking Genome Sequence: GT13272 - 3-prime edge 
    GAAACGGTAG AGGATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTAGT 
    CTCAGCCACC TCCTGCTCCG CCGCCACTAC CGCCGCCGAC TTACAGACCC 
    ATAGCTCCGC TTCGCCACCC TAATCCGTTC CAACAACAAT CTGCTTATAG 
    TAATAACCTC TACGCACATT CGATTCCGGT CAGACGCCAA ATTCAAGATC 
    CGTCAGCTGT TCTTTACCCG TTTGCTCTAC CGGGTCGAGG GTTTTCAGCC 
    CGACCTGTTC GAGGATTCGT CGCAGATCCT TCCGTGACGG CTGGTAATCT 
    GAGTGGGTAC CCTCCTCGCC CGAGTTTTAC TTACGATCCT GGACCATATG 
    AGCAGCGTCA AATGGAATCC TTGTTGCAGC AGTTTATAAG GGAGAGAAAT 
    CCTCAGATTC GTCCATTACC ACGCCTTGGA TTGGGTTCTC CTGTTGGGTT 
    GGGTCCCATT AGAGCAAGTC CTCAATTTCT GCAACCGCGG GTGAGGTTTC 
    TTAGATGAAG TCCTCAATTT CTGCTTGTCA TGTTTCATTT GTTAATGCTT 
    AGATTCTAGC TAAGTAGTGG AAAGATTAGT GGGGAAAATG CTCGAGATGA 
    TCCAAAGTTT CTTGATTGGA GTCTTAGTAG AACTGAATCT GACTGTACCG 
    TGACTTAAGA ATCATCTTGG TTAATATTGG ATCCATTTTT GTCAGAGTGA 
    TTCTCATTCG AACTAATGCA TGTAGTTCTA GAATTTTGAT CGACTAGTCT 
    AGTTATACAA CAATGTGAGT

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1398930 [Map]; Strand: w
      • AT1G04930.2 - [+] show detail - hydroxyproline-rich glycoprotein family protein
        Distance: 0; Region: exon1 (CDS)
      • AT1G04930.1 - [+] show detail - hydroxyproline-rich glycoprotein family protein
        Distance: 0; Region: exon1 (CDS)
      • AT1G04945.3 - [+] show detail - HIT-type Zinc finger family protein
        Distance: -244; Region: promoter
      • AT1G04940.1 - [+] show detail - translocon at the inner envelope membrane of chloroplasts 20
        Distance: -252; Region: promoter
    Flanking Genome Sequence: GT13272 - 5-prime edge 
    CCTACTTTCT CCCTGGCTGA GACGGCGCTG GTCTAACAGT GTTTACTGGT 
    GTTACCGGAG TTTCCGATGC GGTGGATAGA GACGGAGACA CCGTTAGAGA 
    TGCGGAGGAG TTGGGATCGG GAATTGACAT TCCGACGGCG GAAGGAATTT 
    GTCGATTCGA TTTTCAAAAG AATTTTTGGG GAAACAGTAA AAAGAAAAAA 
    AAAAGTTTCA AATTTGGCCA CGGTTTAATA ATGCGCGAAC CCTCTTACTC 
    ATAGGGAGGT TTTCAGGTTT TGGGCCGATC TGGGCCTGAG GGTATTAGGG 
    TCAATTTAAA CACGGGAGAA AAAGAGAGAG TAATCGCCAT TTTTCTTTAT 
    TGGGGGAGTG AAGAAGGATA GGATTCAAAT GATGAAGTAC AGATGAAGGC 
    TCCATAAACC CTACTCTTCT TCTTTTACCT CCAGCTTCAA TTATACCATT 
    CCTGGTTTGT GAAGGTTCGA AACTT

AT1G04930.1

Model type
Protein coding
Short Description
hydroxyproline-rich glycoprotein family protein
Computational Description
hydroxyproline-rich glycoprotein family protein; LOCATED IN: chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT2G32840.1); Has 1624 Blast hits to 1330 proteins in 201 species: Archae - 0; Bacteria - 140; Metazoa - 517; Fungi - 162; Plants - 364; Viruses - 182; Other Eukaryotes - 259 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G04930.2

Model type
Protein coding
Short Description
hydroxyproline-rich glycoprotein family protein
Computational Description
hydroxyproline-rich glycoprotein family protein; LOCATED IN: chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT2G32840.1).
Link
InterPro Scan - TAIR

AT1G04940.1

Model type
Protein coding
Short Description
translocon at the inner envelope membrane of chloroplasts 20
Curator Summary
Tic20 is believed to function as a component of the protein-conducting channel at the inner envelope membrane. Genes AT1G04940 and AT1G04945 were switched for the TAIR7 genome release to give consistency with MIPs annotation.
Computational Description
translocon at the inner envelope membrane of chloroplasts 20 (TIC20); CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein ycf60 (InterPro:IPR019109), Chloroplast protein import component Tic20 (InterPro:IPR005691); BEST Arabidopsis thaliana protein match is: HIT-type Zinc finger family protein (TAIR:AT1G04945.3); Has 279 Blast hits to 278 proteins in 76 species: Archae - 0; Bacteria - 100; Metazoa - 0; Fungi - 0; Plants - 114; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G04945.3

Model type
Protein coding
Short Description
HIT-type Zinc finger family protein
Computational Description
HIT-type Zinc finger family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein ycf60 (InterPro:IPR019109), Zinc finger, HIT-type (InterPro:IPR007529); BEST Arabidopsis thaliana protein match is: translocon at the inner envelope membrane of chloroplasts 20 (TAIR:AT1G04940.1).
Link
InterPro Scan - TAIR