F28904

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F28904

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F28904

Determination of introduced cDNA(s)

  • RAFL05-11-O16 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-11-O16 - Resource: pda02522

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-11-O16 - full reading 
    AACACACTCT GAGTCTTGAA GGTCAACAAC GTCGAGAATA ATGGCATCAT 
    CTCTTTGTGC TTCTTCTGCC ATCGCTGCCA TTTCTTCTCC AAGTTTCTTG 
    GGTGGTAAGA AACTGAGGCT GAAGAAGAAG TTGACTGTTC CAGCTGTGTC 
    CAGGCCAGAT GCGTCGGTGC GCGCCGTCGC AGCTGATCCA GATAGACCAA 
    TCTGGTTCCC GGGAAGCACT CCTCCAGAGT GGCTAGACGG TAGCCTCCCT 
    GGTGACTTCG GATTTGATCC TCTTGGTCTT TCATCGGACC CGGACAGTCT 
    AAAATGGAAC GTACAAGCCG AGATAGTCCA CTGCCGATGG GCTATGCTAG 
    GAGCCGCCGG GATATTCATC CCAGAGTTCC TAACGAAGAT CGGAATCCTC 
    AACACTCCGT CATGGTACAC GGCGGGAGAG CAAGAGTATT TCACGGACAA 
    AACCACACTC TTTGTCGTTG AGCTCATTTT GATCGGATGG GCAGAAGGAC 
    GTAGATGGGC CGATATCATC AAGCCCGGTA GCGTCAACAC TGACCCAGTC 
    TTCCCAAACA ACAAACTGAC GGGCACAGAC GTTGGTTACC CAGGTGGGTT 
    ATGGTTCGAC CCGTTGGGTT GGGGATCCGG TAGCCCGGCT AAGCTCAAGG 
    AGTTGAGGAC CAAGGAGATC AAGAACGGAA GGTTGGCTAT GTTGGCAGTG 
    ATGGGTGCTT GGTTCCAACA CATCTACACT GGCACTGGTC CTATTGATAA 
    CCTTTTTGCA CATCTTGCTG ATCCTGGTCA CGCCACAATC TTCGCTGCTT 
    TCACACCCAA GTGAGACAAC GAAAAAGGGT TATGGGGAGG TGAATGCGTT 
    TGTGTGTGAT CATGTTTGTA CAAATATCAT TTTGAACTTA AAATTATTAT 
    GTACTTTATA TAAATTGTGG TCGAATGCAA ATTAAGGTTC CCCGT

    Gene models with high sequence identity

    1. AT3G61470.1 [+] show detail - photosystem I light harvesting complex gene 2
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Chlorophyll A-B binding protein 1.4e-126
    HMMPfam Chloroa_b-bind 1.1e-52
    superfamily Chlorophyll a-b binding protein 1.4e-66

    See the detailed result >

    AT3G61470.1

    Model type
    Protein coding
    Short Description
    photosystem I light harvesting complex gene 2
    Curator Summary
    Encodes a component of the light harvesting antenna complex of photosystem I.
    Computational Description
    photosystem I light harvesting complex gene 2 (LHCA2); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis, light harvesting in photosystem I, photosynthesis; LOCATED IN: in 6 components; EXPRESSED IN: leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: photosystem I light harvesting complex gene 6 (TAIR:AT1G19150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR