F26505

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F26505

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F26505

Determination of introduced cDNA(s)

  • RAFL05-11-O14 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-11-O14 - Resource: pda01210

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-11-O14 - full reading 
    AAATTGGGGA ACGACGATGG CGACGACTCT TCAGAAACTC TCCTCTCAAA 
    TCCACCGACT CTCTCCATTC ACCAGATCTC TAATCGTTCG CACATCCGCA 
    ACGTCTGCTC CTTCTCCGTC TCTGGGATCG AAGAAAGTCT CTGACCGAAT 
    CGTCAAGCTT TCTGCGATCG ATCCCGATGG ATACAAGCAG GACATCATTG 
    GACTCTCTGG CCAGACTCTC CTTCGTGCGC TCACTCACAC TGGTCTGATA 
    GATCCAGCAT CGCATAGATT GGATGACATC GAGGCTTGCT CAGCGGAGTG 
    CGAGGTTCAG ATCGCAGAGG AATGGCTCGA GAAGCTCCCG CCGCGTACTT 
    ACGATGAGGA GTATGTGCTG AAGCGTAGCT CTAGATCCCG TATCTTGAAC 
    AAGCACTCGC GTCTTGGTTG CCAAGTTGTG TTAACGCAGG AGCTTCAAGG 
    TATGGTCGTC GCTGTCCCTG AAGCTAAGCC TTGGGATATT CCGTAAGTTT 
    TTGTTCTTGA GGATCTCATA AATGTTGGGT TCGTTCTCAA TTTGGCTAAT 
    AAAATTCGCT TTGGAAATTT CGGTACTCTG AAGATAACTC CATTTGAATC 
    TGTAATTTTC GTTTGCTTAC ATTTAAATTT TGTAATGTGG TAAAGAACTC 
    TGCTTGTTTA AACGATTCCC TGCTTCAAGT ATGGGTGAAT GTTGTTTTCT 
    TGATTTCATT TTCGTTGCTT CTTCTTCCAT TAGATTGGTT AGAGACTATG 
    GTGTTATATC TAGAGATTGG TAAAAGCAAT TGGAAAATGC TAGGAGGTTA 
    TT

    Gene models with high sequence identity

    1. AT3G07480.1 [+] show detail - 2Fe-2S ferredoxin-like superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Beta-grasp fold, ferredoxin-type 7.4e-18
    superfamily Ferredoxin 1.4e-15
    HMMPanther FERREDOXIN/ADRENODOXIN 2.5e-09

    See the detailed result >

    AT3G07480.1

    Model type
    Protein coding
    Short Description
    2Fe-2S ferredoxin-like superfamily protein
    Computational Description
    2Fe-2S ferredoxin-like superfamily protein; FUNCTIONS IN: electron carrier activity, iron-sulfur cluster binding; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ferredoxin (InterPro:IPR001041), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675); Has 1263 Blast hits to 1263 proteins in 213 species: Archae - 0; Bacteria - 293; Metazoa - 132; Fungi - 8; Plants - 41; Viruses - 0; Other Eukaryotes - 789 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR