F25939

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F25939

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F25939

Determination of introduced cDNA(s)

  • RAFL05-21-D22 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-21-D22 - Resource: pda02811

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-21-D22 - full reading
    TGACACACAA TCCAATCAAA ACACACAGAG AGAAGAAAAA CTCAGAAGAA 
    AAGCCAAAGA GTGAAACAAA AATGGCGTCG ACGACTCTCT CAATCGCAAC
    AACAATCCGT TCCTCATCTT ATCCTACTCT CGCTTCCATC AATCACTTCC
    CTTCCCGAAC CACCACCATC GAATTCCCCT CTCGCTTCGG TGGTGGTTCA
    TCATCCACAT TGACCCACCG TGCAACCCAT CTCCGTCCAA TCGCCGCCGT
    CGAAGCTCCG GAGAAAATCG AGAAGATCGG ATCCGAAATC TCATCCCTAA
    CCCTCGAAGA AGCTCGTATC CTCGTCGACT ATCTCCAAGA CAAATTCGGT
    GTCTCCCCAC TCTCTTTAGC CCCCGCAGCA GCGGCGGTTG CTGCTCCAGC
    CGACGGTGGC GCGGCGGCTG TAGTGGAGGA GCAAACAGAG TTCGATGTGG
    TTATCAATGA AGTTCCGAGT AGTTCTCGTA TTGCAGTAAT TAAAGCTGTT
    AGGGCTTTGA CTAGCTTGGC GTTGAAGGAA GCTAAGGAGC TAATCGAAGG
    ATTACCAAAG AAGTTTAAAG AAGGTATCAC TAAAGATGAA GCTGAAGAAG
    CTAAGAAGAC TCTTGAAGAA GCTGGTGCTA AAGTCTCCAT TGCTTAAGGT
    TTTTATAAAA AAAAAAAAAG AAGTTGTTAT CTTTTCTGGA ATTTGATTGG
    TCTTTTGTGT TGTTTAGTAT AGTTTGCGTC TGGAATTGTT GAGAAATTGT
    TGTAATTTGA ATCACATTTG GTTTCCCATT AGCTGATTTC GCCATTGATG
    TGAGCTTTTT GGTAGCTGCA CATAACATGT TTGTTGAAAT GCCTAAATGA
    GGCAAATCAC TCGTAGTTGC TTAACATGAA ACAGAGTTAA AAATAAAAAA
    AAAAAAAAAA

    Gene models with high sequence identity

    1. AT3G27830.1 [+] show detail - ribosomal protein L12-A
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Ribosomal protein L7/L12, C-terminal 2.3e-26
    HMMPanther Ribosomal protein L12, chloroplast 9.9e-90
    HMMPanther RIBOSOMAL PROTEIN L7/L12 9.9e-90
    BlastProDom Ribosomal protein L7/L12, C-terminal 4e-18
    HAMAP Ribosomal protein L7/L12 22.128
    superfamily Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like 6.4e-22
    superfamily Ribosomal protein L7/L12, oligomerisation 7.3e-13
    Gene3D Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like 3.3e-21
    Coil coiled-coil 0
    HMMTigr Ribosomal protein L7/L12 1.2e-34

    See the detailed result >

    AT3G27830.1

    Model type
    Protein coding
    Short Description
    ribosomal protein L12-A
    Curator Summary
    50S ribosomal protein L12-A
    Computational Description
    ribosomal protein L12-A (RPL12-A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: in 7 components; EXPRESSED IN: cotyledon, juvenile leaf, leaf; CONTAINS InterPro DOMAIN/s: Ribosomal protein L7/L12 (InterPro:IPR000206), Ribosomal protein L12, chloroplast (InterPro:IPR015608), Ribosomal protein L7/L12, oligomerisation (InterPro:IPR008932), Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like (InterPro:IPR014719), Ribosomal protein L7/L12, C-terminal (InterPro:IPR013823); BEST Arabidopsis thaliana protein match is: ribosomal protein L12-C (TAIR:AT3G27850.1); Has 8536 Blast hits to 8536 proteins in 2747 species: Archae - 0; Bacteria - 5673; Metazoa - 193; Fungi - 128; Plants - 248; Viruses - 0; Other Eukaryotes - 2294 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR