F25920

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F25920

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F25920

Determination of introduced cDNA(s)

  • RAFL09-37-H18 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-37-H18 - Resource: pda06157

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-37-H18 - full reading 
    GCAAATGGAA CCACCGCCTT CTTCTCTGTC CTCCACCGCG GTGGCTTCCA 
    CCTCCATCTC CGCCGCCACT GCTCCTGTTC CTCCTCCTCT ACCTCCTCAC 
    GTGACTTCTT CTTACCCCGA ATCTCTCGAC TCCTCCCCTC GTTCTCGCAC 
    CACCGATGGC TGGGATGACC TTCCTGCTCC TTCTGGCGGC GGCGGTGGCG 
    GTGGTGGTAG CGCCGTCTCT TCTAAACTTC GTTTTATGTG TAGCTACGGC 
    GGTCATATCC TTCCTCGCCC TCACGATAAG TCTCTCTGCT ACATGGGCGG 
    TGACACTCGC ATCGTTGTCG TCGACCGTAA CTCCTCTCTC CCTTCTCTCA 
    TCGCTCGTCT CTCCAACACG CTTCTCGACG GTCGTTCCTT CACCCTCAAG 
    TACCAGTTAC CTAGCGAAGA CCTTGACTCT CTCATCTCCG TCACTACCGA 
    CGAAGATCTC GACAACATGA TCGAAGAGTA TGACCGTACC ATTTCCGCTT 
    CCAATTCCAC CAAACCTTCG CGTCTCCGGT TGTTTCTATT CACCTCCAAG 
    CCTGAGGCTA CTCAATCTAT GGGTCAGATC CTTGAGAGCT CTGCCAAGAG 
    CGACGATTGG TTCCTCAACG CACTCAATAG CGCCGGTCTT CTCAATCGAG 
    GATTCTCAGA TTCTGATACT AACGTCAATC GTTTACTTGG TTTGGATGAT 
    GCTCTTGCTC TCCGTTCTAA TTCCGGTGAC AACAACAATC GAGATGGTGA 
    TGATGGCTCT GTTAAAAGCG CCAAGCAACA GCAACCTCCA CCGCCGCAGC 
    AGCAAGAACA ACAGCAAGGA GGCCAAGATG TGAACTGCTT ACCGGATTCT 
    CCGATGTTAG ATACATCCTC TTCTTTCGGC TCCACTTCTT CGTCTCCCTC 
    GCTCGCCAAT TTGCCTCCGA TCCGTGTCCA TGTAGAGGAA CCAGGCGGAG 
    TAAGGACTTT GCCAGATCAG AGAAATCTGG GAATTGAAGA ACAGTTCGCA 
    CGATTCAACG TCGGGAACAA GCATCAGCTA CATGACGACG GATTTGCTGC 
    GATCTCTTCA CCACCGCCGA TGCCTGTCAC AATCGCCCTT CCTGCTGCGC 
    CTGTGACTGC AGCCACCGTC TCTAATGAGT TCCAGGCCAG GGTTTACTCA 
    GATGACGAGA GATCCGATCA CGGCGTGCAG GCTGGATACA GGAAGCCTCC 
    GACTCCGCGA TCGCAGCCGC AGAATCTACC GCCTCAGCAG GCTCATCAGC 
    TGAAATCAAA TAGCGGTGGT GGACACGAGC TGCCATCACC CAATTCCGTT 
    TCCAGTGATA GCAGTATGAG CAACCCAATG TTTCACCAAA GACCATCTGT 
    CTATCAAGAA CCAATTGCTC AGATACCTTC TGGCTCTACC GTTGTTACTG 
    GTATGATCAA TCCCTCAGAT CCAAGCACAC TTTTGTCACA GCATCAGAAT 
    CAGGACCCAG CCTATATCCT TCACCCCCAG TTTGAGCAAC AATCTGCACA 
    ATCTCAGCCA CAGCAGCAGT TCATACACAC TGCTGCTCCT CCTCAATACA 
    TTCATCACCA TCCGTCTAGC GGCCTTCCTG TCCCGACTTA CATCCAGGTT 
    TACCCTTCGC AACAGCCTCA ACAGTCCTTC CATCAACACG CAGGTCGACT 
    GGATCAGCAG CCTTATCCTG TTTATTATGT CACTGCTCCT GTCCCACCTA 
    GGCCCTACAG TATGCCTGTG CCACAATCTC CAAGTGTGAG CGATGCTGCA 
    GGGTCTATCC CCTCTAACCA TCCCAACTCT ACCATGATGC CTCCACCTCC 
    TAACAACCAC ATGAGAAGTG TTAGCAGTGG CAAACCTGAG ATGGGACAGG 
    CTGGGGTTTA CACAACAGCC CCAGGTGTGG GCGGTGCTCA GATGGTTCAC 
    CAGATTCCCA CAAACCAGCA GCAATTCATG GGGTATTCGC AGATCCGTCA 
    CCCTCCTCAG TCTGGTTCAG CTGGGAATCC AAACTATGGA TATGAATATG 
    TCGACAATGC TCATACACAG ATATACTACA CTCAACCTAT GGGACATGCA 
    CAGTACCAGA CAATGACTGG GCCTCCACCT GCCATGGTGA TGCCTGATGG 
    TTCTGCTGCT GCTAAGCTTC CAGCTGAGAA CATGACTCAA CAGATCCGGA 
    GTTCACAGCC ATTGTGACAC ACACAAGGAA CACATGAAGA TGAACCACAA 
    AATTTTGGAG GAAGAAAACC CCGGGTTGGT TTTTAAACGT ATAAATATAT 
    AACTTTTACT TCTTTTTTCT TCTCTTCTTT TACAAGTTGC TGCATCAAAA 
    AAAGAGTCTG GTGTCATGTT AAGTTTGGTA TTATGGGTTG TGTTTAAAAG 
    TGTTGTGTGA GTAAATTAAA AAAACAAATA AATAGTGCTT CTTGGTGGGA 
    TTTTACATTA TATAGTTGCA ATTGATACAT GTAGTGCTTT ACCAAAAAAA 
    AAAAAAAAA

    Gene models with high sequence identity

    1. AT2G01190.1 [+] show detail - Octicosapeptide/Phox/Bem1p family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Octicosapeptide/Phox/Bem1p 2.6e-30
    HMMPfam Octicosapeptide/Phox/Bem1p 1.5e-18

    See the detailed result >

    AT2G01190.1

    Model type
    Protein coding
    Short Description
    Octicosapeptide/Phox/Bem1p family protein
    Computational Description
    Octicosapeptide/Phox/Bem1p family protein; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270); BEST Arabidopsis thaliana protein match is: Octicosapeptide/Phox/Bem1p family protein (TAIR:AT3G18230.1); Has 5347 Blast hits to 4615 proteins in 344 species: Archae - 4; Bacteria - 100; Metazoa - 2308; Fungi - 1293; Plants - 931; Viruses - 29; Other Eukaryotes - 682 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR