F25838

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F25838

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F25838

Determination of introduced cDNA(s)

  • RAFL05-17-P08 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-17-P08 - Resource: pda03041

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-17-P08 - full reading 
    GCTCTCGCGC TTTTCTCTCT CTCTCTCGCG TTCGTTCTTA TCCACGAGCT 
    CTGCACCGTC GCAATCTCCG TCTTCTCCAT TTAGATCCAA CACAGAGCCT 
    TTTCTACATG AAATTCGGCA AAGAGTTTCG TACTCACCTC GAAGAAACTT 
    TACCAGAGTG GAGAGACAAG TTCCTTTGCT ATAAACCTTT AAAAAAGCTT 
    CTCAAATATT ATCCTTATTA CTCCGCCGAT TTTGGACCCG CCAATTCCGA 
    TCACAACGAT TCGCGTCCAG TATTTGCTGA TACTACTAAC ATCTCTTCCG 
    CCGCCGACGA CGGCGGTGTG GTTCCCGGCG TCAGGCCATC GGAAGATCTC 
    CAGGGTTCGT TTGTGAGGAT ACTTAACGAT GAACTTGAGA AGTTTAACGA 
    TTTTTACGTT GATAAGGAAG AAGATTTCGT TATCAGATTA CAGGAGCTCA 
    AGGAAAGAAT CGAGCAAGTT AAAGAAAAGA ATGGGGAATT TGCATCAGAA 
    AGTGAGTTCA GCGAAGAAAT GATGGATATT CGGAGAGACC TTGTTACCAT 
    TCATGGCGAG ATGGTGCTCC TGAAAAACTA CAGCTCCCTT AATTTTGCAG 
    GACTTGTCAA GATTTTGAAG AAGTACGATA AAAGAACAGG TGGACTTTTA 
    CGTTTGCCTT TCACACAGCT TGTTCTCCAT CAACCCTTCT TTACTACAGA 
    GCCACTTACT AGGTTAGTCC GTGAATGTGA GGCCAATCTT GAGCTTCTTT 
    TTCCTTCAGA AGCGGAAGTT GTAGAGTCTT CTAGCGCAGT GCAAGCACAC 
    TCAAGCTCAC ATCAGCACAA CTCCCCAAGA ATCTCAGCTG AGACTTCCTC 
    AACTCTCGGC AATGAAAATC TTGATATATA TAAGAGTACA CTCGCTGCAA 
    TGAGAGCTAT AAGAGGGTTA CAAAAGGCTA GCTCGACGTA CAACCCTTTA 
    TCATTCTCAT CGCTTCTTCA GAACGAGGAT GATGAGACGG TAACAGCTGA 
    AAACTCTCCA AACTCTGGGA ACAAAGATGA TTCAGAGAAG GAAGATACTG 
    GACCTTCCCA CTGATCAGAA GAGAATGATG CTCTTTTTGA TCAAGATTTT 
    GAGAATTTGC TTCTTGATTT CACCCTAACT TTTCATAAAA TTAACACATT 
    TTACTTTACT TCTTCACCTT TTGCAGGACA CAACTTCTGT ATGCATTTGA 
    ATTGTAGTAC AGTCGTTTAT AGATTTTCAA TGAAATTTTC CTCCATTGTC 
    TT

    Gene models with high sequence identity

    1. AT5G15330.1 [+] show detail - SPX domain gene 4
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam SPX, N-terminal 7.3e-21
    HMMPfam SPX, N-terminal 2.3e-12
    ProfileScan SPX, N-terminal 27.879
    Coil coiled-coil 0
    HMMPanther XENOTROPIC AND POLYTROPIC MURINE LEUKEMIA VIR 4.1e-45
    HMMPanther XENOTROPIC AND POLYTROPIC MURINE LEUKEMIA VIR 4.1e-45

    See the detailed result >

    AT5G15330.1

    Model type
    Protein coding
    Short Description
    SPX domain gene 4
    Computational Description
    SPX domain gene 4 (SPX4); CONTAINS InterPro DOMAIN/s: SPX, N-terminal (InterPro:IPR004331); BEST Arabidopsis thaliana protein match is: SPX domain gene 1 (TAIR:AT5G20150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR