F25604

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F25604

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F25604

Determination of introduced cDNA(s)

  • RAFL05-02-F02 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-02-F02 - Resource: pda00837

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-02-F02 - full reading 
    ATTCAACACC AGCAAAATCC GCTTTGTTGC AGAGGATCAC AATCTAATGG 
    CGATTCCAAT GTCCATGGCA ATGGCGACTC CTACAGATTC CGTGAGCAGA 
    GTCTGGAGTA TGTCTTCTCT CAAATCAGCT CTTCCCTCCA CCGCATCACT 
    CCGATTACCT TCCTCGTCTT CTCGCCGTCC GGTTACTCTT CGTCTCCCAA 
    TCTCTTCTCC TTCACTCCCA TCTTTCTCCG GTCTCTCTCC GGTCAATCCT 
    CTCCTCTCAA TCGGACTTCC AGATTGGCAA AGCTTTGAGA ATGGATTCAA 
    AATTGTTGAC GGTGGTGGTC GTATCTACGC GATGAGACAC GGACGACGTG 
    TTCCGAAGCT GAACAGACCA CCGGACCAGC GCAAAGCTCT TCTGCGAGGA 
    CTCACGACTC AGCTTCTTAA GCATGGGAGA ATCAAGACGA CTCGAGCTAG 
    AGCTAGTGCG ATGAGGAAGT TCGTTGACAA GATGATTACA TTGGCTAAAG 
    ACGGTTCGTT GCACAAGCGA AGACAAGCCT TGGGATATAT CTACGAGAAA 
    CAGATTGTTC ACGCTCTGTT TGCTGAGGTT CCTGATAGAT ACGGTGAGAG 
    AAACGGTGGA TACACGAGGA TCATCAGAAC TCTTCCAAGG AGAGGTGATA 
    ATGCTCCAAT GGCTTACATT GAGCTTGTCT AAGGTCAATA TCTCTTTTAT 
    TTTGCTCAAT TGTTTCACTT TTGCTCTGTA ATATTGAAAA ACAGTTGTTG 
    ATGCAGATAT GAGATCATTT TGTTTTGTGA GCTTCAATTG GC

    Gene models with high sequence identity

    1. AT3G54210.1 [+] show detail - Ribosomal protein L17 family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Ribosomal protein L17 1.8e-60
    superfamily Ribosomal protein L17 1.3e-38
    Gene3D Ribosomal protein L17 1.5e-43
    HAMAP Ribosomal protein L17 26.201
    HMMTigr Ribosomal protein L17 2.8e-59
    HMMPfam Ribosomal protein L17 5.3e-36

    See the detailed result >

    AT3G54210.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein L17 family protein
    Computational Description
    Ribosomal protein L17 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L17 (InterPro:IPR000456); BEST Arabidopsis thaliana protein match is: Ribosomal protein L17 family protein (TAIR:AT5G09770.1); Has 8019 Blast hits to 8019 proteins in 2737 species: Archae - 0; Bacteria - 5501; Metazoa - 121; Fungi - 128; Plants - 120; Viruses - 0; Other Eukaryotes - 2149 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR