F25342

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F25342

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F25342

Determination of introduced cDNA(s)

  • RAFL09-33-N04 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-33-N04 - Resource: pda06022

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-33-N04 - full reading 
    AAGAGGAGCA ACAATGGAGA TCACCACTAT CATATTCCTC ATCATATCCT 
    CTCTCACCTT CTCCATCTTC CTTAAACTCA TCTTCTTCTT CTCAACTCAC 
    AAACTCCCAC CGGGACCACC TCGTTTTCCG GTCATCGGAA ACATCATCTG 
    GCTTAAGAAA AACAACTTCT CCGATTTCCA AGGCGTTCTC CGTGACTTAG 
    CCTCCCGTCA CGGACCAATC ATAACACTCC ACGTAGGCTC CAAACCTTCC 
    ATCTGGGTCA CAGACAGATC ACTCGCTCAC CAAGCCCTTG TCCAAAACGG 
    TGCCGTTTTC TCCGACCGTT CTCTCGCTCT CCCTACCACC AAAGTCATCA 
    CCAGCAACCA ACACGACATC CACTCCTCCG TCTATGGCTC TCTCTGGAGA 
    ACCCTCCGCC GCAACCTCAC CTCCGAAATC CTCCAGCCCT CGCGCGTGAA 
    AGCACACGCG CCGTCGAGGA AATGGTCTCT CGAGATTCTC GTGGATCTGT 
    TCGAGACAGA GCAGAGAGAG AAAGGACATA TCTCCGACGC TTTAGATCAT 
    TTACGTCACG CTATGTTTTA TTTGTTGGCT CTGATGTGTT TCGGAGAGAA 
    ACTGAGAAAA GAAGAGATCA GAGAGATCGA AGAAGCTCAG TACCAAATGC 
    TCATAAGCTA CACCAAGTTC AGCGTCCTCA ACATCTTCCC AAGCGTAACC 
    AAGTTCTTGC TCCGGCGAAA ATGGAAAGAG TTTTTAGAAC TAAGGAAATC 
    TCAAGAGAGC GTTATACTTC GATACGTGAA CGCAAGAAGC AAAGAAACCA 
    CCGGAGATGT TCTCTGTTAC GTCGATACGC TGCTGAATCT TGAGATCCCG 
    ACGGAGGAGA AAGAAGGAGG GAAGAAGAGG AAACTGAGTG ACTCGGAGAT 
    CGTGAGTCTG TGTTCGGAGT TTCTTAACGC AGCTACGGAT CCAACGGCGA 
    CGTCGATGCA GTGGATCATG GCGATCATGG TGAAGTATCC AGAGATACAG 
    AGGAAAGTAT ACGAGGAAAT GAAGACTGTG TTCGCCGGAG AAGAAGAAGA 
    AAGAGAAGAG ATCAGAGAAG AGGATTTGGG GAAGTTGAGT TACCTCAAAG 
    CTGTGATCTT GGAGTGTCTA AGAAGACACC CTCCTGGTCA TTACTTGTCT 
    TACCATAAGG TCACACGCGA CACCGTTTTG GGTGGATTTC TCATTCCGCG 
    CCAAGGTACT ATAAACTTTA TGGTAGGAGA AATGGGCCGG GACCCAAAAA 
    TATGGGAAGA TCCTCTAACG TTCAAGCCAG AAAGATTTCT AGAGAACGGA 
    GAAGCATGTG ATTTTGATAT GACGGGAACT CGCGAGATTA AAATGATGCC 
    GTTTGGAGCG GGACGACGGA TGTGTCCCGG CTACGCGCTT TCGTTGCTTC 
    ACCTGGAATA TTATGTGGCC AATTTGGTTT GGAAATTCGA GTGGAAATGT 
    GTGGAAGGTG AAGAAGTTGA TCTATCCGAG AAGCAACAGT TCATCACAAT 
    GGTCATGAAA AACCCTTTCA AAGCAAATAT TTATCCAAGG AGAAAGTGAT 
    ATTTGCTTTT GTCATATTAT CAAAAAGGCC CATTGGGCTT ATTTGTCGTA 
    TGTATATTAA AAACTTTGTC TCATATGTAT TAAAACAATT TGGGCCTTTA 
    ATGGGTTTCA ATATAAAGAT GTCAACACTT TTAGTC

    Gene models with high sequence identity

    1. AT3G03470.1 [+] show detail - cytochrome P450, family 87, subfamily A, polypeptide 9
      E-value: 0; Score: 99.94

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    HMMPanther CYTOCHROME P450 SUBFAMILY 79A 8.6e-285
    HMMPanther Cytochrome P450 8.6e-285
    superfamily Cytochrome P450 8.5e-110
    HMMPfam Cytochrome P450 8e-89
    FPrintScan Cytochrome P450, E-class, group I 8.9e-36
    FPrintScan Cytochrome P450, E-class, group I 8.9e-36
    FPrintScan Cytochrome P450, E-class, group I 8.9e-36
    FPrintScan Cytochrome P450, E-class, group I 8.9e-36
    FPrintScan Cytochrome P450, E-class, group I 8.9e-36
    FPrintScan Cytochrome P450, E-class, group I 8.9e-36
    FPrintScan Cytochrome P450, E-class, group I 8.9e-36
    FPrintScan Cytochrome P450, E-class, group I 8.9e-36
    FPrintScan Cytochrome P450, C-terminal 1.7e-08
    FPrintScan Cytochrome P450, C-terminal 1.7e-08
    FPrintScan Cytochrome P450, C-terminal 1.7e-08
    FPrintScan Cytochrome P450, C-terminal 1.7e-08
    Gene3D Cytochrome P450 9e-103
    PatternScan Cytochrome P450, conserved site 0

    See the detailed result >

    AT3G03470.1

    Model type
    Protein coding
    Short Description
    cytochrome P450, family 87, subfamily A, polypeptide 9
    Curator Summary
    member of CYP89A
    Computational Description
    "cytochrome P450, family 87, subfamily A, polypeptide 9" (CYP89A9); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: response to cyclopentenone; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 87, subfamily A, polypeptide 6 (TAIR:AT1G64940.1); Has 30488 Blast hits to 30273 proteins in 1588 species: Archae - 47; Bacteria - 2858; Metazoa - 11557; Fungi - 5907; Plants - 9145; Viruses - 0; Other Eukaryotes - 974 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR