F25210

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F25210

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F25210

Determination of introduced cDNA(s)

  • RAFL09-14-D18 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-14-D18 - Resource: pda01748

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-14-D18 - full reading 
    AACCAACCTT TCAAAACAGA ACACGAAGAC ATGGACCGAA CACAATCTCC 
    AAAGACAGCT CTGTTCGCCG TGTTGGCAAC ACTCCTTGTC TTAACCGTGA 
    ACGGCCAGTC ACTTTGTAAC ACACACAGGT TCACCAATAA CCTCGCCTTC 
    GCAGATTGCT CTGACCTCTC GGCCTTAGGC TCTTTCCTTC ACTGGACCTA 
    CAATGAACAA AACGGTACCG TCTCAATCGC CTATCGCCAC CCTGGAACCT 
    CTGCTTCTTC TTGGGTTGCT TGGGGACTTA ACCCAAGTAG TACTCAGATG 
    GTTGGGACGC AAGCTCTCGT AGCCTTCACA AACACAACAA CTAACCAATT 
    CCAGGCCTAT ACCTCTTCCG TGAGTTCCTA TGGTACGCGG CTTGAACGTA 
    GTAGCCTAAG TTTCGGTGTG AGTGGCCTCT CCGCGACTCT GGTCAGTGGC 
    GAGGTTACGA TCTTTGCAAC TCTTGAGTTG TCTCCGAATC TGATCACGGC 
    CAACCAGCTT TGGCAGGTGG GACCTGTTGT CAACGGTGTT CCTGCGAGTC 
    ATCAAACCTC AGGAGATAAT ATGAGATCGA GTGGTAGGAT TGATTTCCGG 
    ACTGGTCAGG CATCAGCTGG TGGTGGTGGT TCCGGTGACA GGCTGAGGAA 
    GAGAAACACG CATGGAGTAC TAAATGCGGT CAGCTGGGGA GTACTAATGC 
    CAATGGGAGC AATGATGGCT CGGTACATGA AAGTCTTCGC CGATCCAACA 
    TGGTTCTATC TCCACATTGC CTTTCAAGTG TCGGGTTACG TCATCGGGGT 
    AGCCGGTTGG GCCACCGGAA TCAAGCTTGG TAACGACTCA CCAGGCACAT 
    CTTACTCAAC CCATCGTAAC CTTGGAATAG CACTCTTCAC ATTTGCCACA 
    CTTCAAGTAT TTGCTCTGCT TGTAAGGCCA AAGCCAGACC ACAAATATCG 
    AACGTACTGG AACGTGTACC ATCACACCGT TGGATACACA ACCATCATCC 
    TCTCTATTGT CAACATTTTC AAAGGATTCG ACATTTTGGA CCCGGAGGAT 
    AAATGGCGAT GGGCTTACAT TGGGATCCTC ATCTTTCTTG GTGCTTGTGT 
    CCTTATTCTC GAGCCACTCA CTTGGTTCAT TGTTCTTCGC CGTAAGAGCC 
    GTGGAGGTAA CACAGTCGCT GCACCAACTT CGAGCAAGTA CTCTAACGGC 
    GTCAATGGTA CCACCACCAC TGGACCACAT CACCAGGACG CCTAGTTTCA 
    CTTTTTGTTT CTACACTTGT TCTTGTTTGT TCTACTTCTA CTCGATTTTG 
    GATTCTTTTT TGATTTGATA TTTTGTAGGC TCATGTATGT ATTATGTATA 
    CAATTTTATT CATTGTGTTA TAGATATATC GATTTATGGA GTCAAAT

    Gene models with high sequence identity

    1. AT5G35735.1 [+] show detail - Auxin-responsive family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart DOMON related 6.2e-34
    HMMSmart Cytochrome b561/ferric reductase transmembrane 2.3e-51
    HMMPIR Uncharacterised conserved protein UCP037471 9.1e-286
    ProfileScan DOMON related 18.55
    ProfileScan Cytochrome b561/ferric reductase transmembrane 33.483
    HMMPfam Protein of unknown function DUF568, DOMON-like 4.7e-33
    HMMPfam Cytochrom_B561 1.2e-07
    HMMPanther FAMILY NOT NAMED 0.0008

    See the detailed result >

    AT5G35735.1

    Model type
    Protein coding
    Short Description
    Auxin-responsive family protein
    Computational Description
    Auxin-responsive family protein; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome b561, eukaryote (InterPro:IPR004877), Uncharacterised conserved protein UCP037471 (InterPro:IPR017214), Protein of unknown function DUF568, DOMON-like (InterPro:IPR007613), DOMON related (InterPro:IPR005018), Cytochrome b561/ferric reductase transmembrane (InterPro:IPR006593); BEST Arabidopsis thaliana protein match is: Auxin-responsive family protein (TAIR:AT5G47530.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR