F25106

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F25106

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F25106

Determination of introduced cDNA(s)

  • RAFL09-47-L06 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-47-L06 - Resource: pda06346

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-47-L06 - full reading
    AGAAGTGGTA TAGTCTAGGC CGATACATTT CACTATCTCT CTCTCTTTTG 
    TTTTTCCTCT TCTTCTTTTT TTCCATTTGA TTTCAAACTC TCACACAAAG
    AGCTTCAGAT TTATAAGACC ATGATAATGG CTTTAAGACA AAGATTGGCA
    AGAAGAAAAA ACTAAAGAGA AACGACCAAA ATCTCAAGCA AACAGTACTA
    ACTTCTGTTG CAAAACAGAA GAAGATGTCT TGTAATAATG GAATGTCTTT
    TTTCCCTTCA AATTTCATGA TCCAAACCTC TTACGAAGAT GATCATCCTC
    ATCAATCTCC ATCTCTTGCT CCTCTTCTTC CTTCTTGCTC TCTACCTCAA
    GATCTCCATG GATTTGCTTC GTTTCTAGGT AAGAGATCTC CAATGGAAGG
    GTGTTGTGAT TTAGAAACAG GGAACAATAT GAATGGAGAA GAGGATTATT
    CAGATGATGG GTCACAAATG GGAGAGAAGA AGAGGAGATT GAACATGGAA
    CAAGTGAAGA CACTAGAGAA GAACTTTGAG CTTGGAAACA AACTTGAACC
    AGAGAGGAAA ATGCAGCTAG CTCGTGCCTT AGGTTTGCAA CCAAGACAGA
    TCGCGATTTG GTTTCAAAAT CGAAGAGCTC GTTGGAAAAC AAAGCAGCTA
    GAGAAAGATT ATGATACTCT TAAACGACAG TTTGATACAC TTAAAGCTGA
    AAATGATCTT CTTCAAACTC ATAATCAGAA ACTCCAAGCT GAGATAATGG
    GATTAAAAAA CAGAGAACAA ACAGAATCAA TAAATCTAAA CAAAGAAACT
    GAAGGATCTT GCAGTAACAG AAGTGATAAC AGTTCAGATA ATCTCAGACT
    AGATATCTCA ACTGCGCCGC CATCAAACGA CAGTACATTA ACCGGTGGCC
    ACCCACCGCC ACCACAGACA GTTGGTCGAC ACTTCTTCCC ACCGTCGCCA
    GCCACCGCAA CGACAACTAC TACAACAATG CAGTTCTTTC AAAACTCATC
    TTCAGGACAG AGTATGGTTA AAGAAGAGAA TAGTATCAGT AACATGTTCT
    GTGCAATGGA TGACCATTCT GGTTTTTGGC CATGGCTTGA TCAGCAACAG
    TACAATTGAA ATTGGTCTAC CTGTTTTTTT TGTTTTTGTT TTTAAAAAAA
    TTTATATTTT TTTTTTTTGT ATTTGGAATT TTGATCAGAA GAACCCATGC
    ATGTTTTCAA AAACTGGAAT CTATATCATT AGCTCACTTT C

    Gene models with high sequence identity

    1. AT1G69780.1 [+] show detail - Homeobox-leucine zipper protein family
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Homeodomain-like 6.5e-20
    Gene3D Homeodomain-related 1e-14
    PatternScan Homeobox, conserved site 0
    ProfileScan Homeobox 17.216
    HMMPfam Leucine zipper, homeobox-associated 9.4e-18
    HMMPfam Homeobox 2.3e-15
    FPrintScan Helix-turn-helix motif, lambda-like repressor 1.4e-05
    FPrintScan Helix-turn-helix motif, lambda-like repressor 1.4e-05
    HMMPanther HOMEOBOX PROTEIN 2.7e-13
    HMMSmart Homeobox 1.8e-17
    Coil coiled-coil 0

    See the detailed result >

    AT1G69780.1

    Model type
    Protein coding
    Short Description
    Homeobox-leucine zipper protein family
    Curator Summary
    Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.
    Computational Description
    ATHB13; FUNCTIONS IN: sequence-specific DNA binding, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: cotyledon morphogenesis, regulation of transcription, DNA-dependent, response to sucrose stimulus, leaf morphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Helix-turn-helix motif, lambda-like repressor (InterPro:IPR000047), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox protein 23 (TAIR:AT1G26960.1); Has 11763 Blast hits to 11710 proteins in 595 species: Archae - 0; Bacteria - 0; Metazoa - 9272; Fungi - 193; Plants - 2061; Viruses - 5; Other Eukaryotes - 232 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR