F25047

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F25047

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F25047

Determination of introduced cDNA(s)

  • RAFL03-08-H14 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL03-08-H14 - Resource: pda00018

    full reading [+] show sequence

    Nucleotide sequence: RAFL03-08-H14 - full reading 
    ATTTACAACT GTGGATAAGC CTTTTAGTCT GACTCAGCTT TCTCAAGATC 
    CGAAAACACA CTGACCCAAC CCGGTTCGAT TTTGCTTAAC CGGACAAGAT 
    ACATTAATCT GCCTAATCTT CAATTATTTA AAAGCTAACT AAACGTTATA 
    CGTACTAATC ACTTCTTCCC CTATAAATAA ACCTTTCTAA TTTCTCATCT 
    CAAATCACAC TGCATCACAA AACCCAAATC GGAACTTAAA CCAAAAGACA 
    AACAAAAACG CCGTCGTTTC ACGATGCTTT CTTCTTCCCC AACCTTCTTC 
    GCTACTCCAT TTCTCTCTTC TTCTTCTTCT TCTTCTCCGT CGTTCTCTTC 
    TACTTCACCA CCGTCACGCA TTTCCCGGAT CTCGCCGTCG CTTTCTACAA 
    CCACCGCGTC CTACACCTGC GCCGAAGATC TACCGAGATT ACGCCAAATC 
    CCGCAGCGAT TTTCAGCAAC CGCGTCTCTC TACGAGATCC TTGAAATTCC 
    CGTCGGCTCG ACGAGTCAAG AGATCAAATC AGCTTACCGG CGACTAGCCA 
    GGATCTGTCA TCCCGATGTA GCGAGAAATA GTCGGGATAA CTCGTCGGCG 
    GACGATTTCA TGAAGATCCA CGCAGCGTAT TGCACGCTTT CGGATCCCGA 
    GAAACGCGCC GTTTATGATC GGAGGACTCT TCTTCGGAGC CGGCCGTTAA 
    CGGCTGGATA CGGCAGTTAC GGTGGACGGA ATTGGGAAAC CGATCAGTGC 
    TGGTAGCGAG TTGACTCGAT GTGTCGAGTT

    Gene models with high sequence identity

    1. AT2G17880.1 [+] show detail - Chaperone DnaJ-domain superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Heat shock protein DnaJ, N-terminal 17.132
    superfamily Heat shock protein DnaJ, N-terminal 2e-19
    HMMSmart Heat shock protein DnaJ, N-terminal 1.2e-17
    Gene3D Heat shock protein DnaJ, N-terminal 5.3e-16
    HMMPanther DNAJ-RELATED 1.4e-31
    HMMPanther Molecular chaperone, heat shock protein, Hsp40, DnaJ 1.4e-31
    HMMPfam Heat shock protein DnaJ, N-terminal 2e-20

    See the detailed result >

    AT2G17880.1

    Model type
    Protein coding
    Short Description
    Chaperone DnaJ-domain superfamily protein
    Computational Description
    Chaperone DnaJ-domain superfamily protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623); BEST Arabidopsis thaliana protein match is: Chaperone DnaJ-domain superfamily protein (TAIR:AT4G36040.1); Has 19677 Blast hits to 19677 proteins in 3133 species: Archae - 135; Bacteria - 8632; Metazoa - 3284; Fungi - 1660; Plants - 1836; Viruses - 5; Other Eukaryotes - 4125 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR