F24030

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F24030

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F24030

Determination of introduced cDNA(s)

  • RAFL05-08-E12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-08-E12 - Resource: pda01117

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-08-E12 - full reading 
    AACACACTTG AACACTACTT TCGAACTCTC TCTTTATCTC TCTTGCAATG 
    AAGCTCTCTA TGCGTTTGAT CTCAGCTGTT CTCATCATGT TCATGATATT 
    CGTCGCCACT GGGATGGGAC CAGTCACTGT GGAGGCACGC ACTTGTGAGT 
    CGCAGAGCCA TAGATTCAAG GGTACATGCG TGAGTGCATC AAACTGCGCC 
    AACGTGTGCC ACAACGAAGG CTTTGTCGGA GGTAACTGCC GTGGATTCCG 
    TCGTCGTTGC TTCTGCACCA GACATTGCTG ATCTACCCAT TCTCATGCAT 
    AATTCAAGCT TTGATCCATC GTCGTGTGTC ACTTCTTTCT TATCTAATCT 
    TCCGTACAGT ACCATGAAGT ACCGTACATT AGTGTGTTCT CAAATAAGTC 
    TTTGGATTTG TGTGTTTCCG GTTTAAATGT AATGTTAAAT CAACTAATGA 
    CTTTGAGCCT TTGACTAGTA ATAATCAAAA TCTATGTTCT GAAAAAAAAA 
    AAAAAAA

    Gene models with high sequence identity

    1. AT2G02100.1 [+] show detail - low-molecular-weight cysteine-rich 69
      E-value: 0; Score: 99.80

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Knottin 4.1e-11
    Gene3D no description 1.5e-15
    HMMPfam Gamma thionin 2e-17
    PatternScan Gamma thionin 0
    FPrintScan Gamma Purothionin 2.7e-10
    FPrintScan Gamma Purothionin 2.7e-10
    superfamily Scorpion toxin-like 2.2e-14

    See the detailed result >

    AT2G02100.1

    Model type
    Protein coding
    Short Description
    low-molecular-weight cysteine-rich 69
    Curator Summary
    Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.
    Computational Description
    low-molecular-weight cysteine-rich 69 (LCR69); FUNCTIONS IN: peptidase inhibitor activity; INVOLVED IN: defense response; LOCATED IN: plasma membrane, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Gamma thionin (InterPro:IPR008176), Knottin (InterPro:IPR003614), Gamma Purothionin (InterPro:IPR008177); BEST Arabidopsis thaliana protein match is: low-molecular-weight cysteine-rich 68 (TAIR:AT2G02130.1); Has 400 Blast hits to 400 proteins in 82 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 400; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR