F23219

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F23219

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F23219

Determination of introduced cDNA(s)

  • RAFL16-49-I12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL16-49-I12 - Resource: pda19816

    full reading [+] show sequence

    Nucleotide sequence: RAFL16-49-I12 - full reading 
    CTGGTTCTTG ATTTGGAGTT TCTCTGACTC TGTTTTGACT ACTTTGGATT 
    TAAGCTCGTT GATGTAAGCG ATTGCGTCAC CGAGTAACGA AGCTTTATCC 
    ATTTTTGAAA CGTTTGGTAC AACCGCTCGT AACGCGTAGA ATCTTTGGTT 
    TAGTTTCTCG CGTCTTTGTC TCTCTGCTTC GACGTGGTTT AGTGGCTCTT 
    CTCTACCGTT TGCTGGCTTT CTTCCTCGTT TCTTTGGACG TTTCTCTACT 
    GCTACTTCTT TCACGACGGA AGCTTCTAGA TCGGAGTGAT CTGATTCTCC 
    GGCGGTTTTA TCTCCGAATG ATAGAACTTT ATCTTCGTTC AAAACCATCG 
    ACCTCTTTCT TTTGTTTTCG AATTGTGTTT GACCCGAATA AGAACTTGGA 
    TCCGGGTTTC CGGAGCTTCG TTTACCTTCA TCGCCGAAGT TTAATATCTC 
    GCCGGATCTT GGTTTCACTA AAGTAGAACT TGACGTCGAA AAATTAAGTT 
    CTCGGGAGAA AGTGTTATTG AATTTCGGAT TCTGGGTCTG AGAATGAACC 
    GGACTCGGAG TCGGATCCAG ATTCGGGTTT TCGGTTATTG TGCTTGAGCT 
    ACCGTTCTCA AACTGAATAG ACTTTGAAAA AAGCTGGGAG CTAGAACTTG 
    GAGCTCCGTT ACCCGGTTCG TTAGATCCAG GTGTTCCAAT CGGGTCATTA 
    ATCCACATAG ACGGGTCGTT CTCACCTTGA TCCGGGTCAA GATTCCAATT 
    AAGACCCGAT AAATCTCCAG CTCCGCCGTC GAAATTGAAA AGAATTCGAA 
    CCTTGTTAAT AAGGTCCGAA CTCTGTCGGA TCGGCTCCGT TGACCCGACT 
    TCCACAACTC CGTTCGCCGA AGGAATACAC GCAATAGTAT GCATCCCAAA 
    CACTCCTCCT TGCTTAGCCC GTTCACAACC CGACCCGGAT AATTGATCTG 
    ACCCGGAAAC CCAAACCGCG TTACCCGTTG CAAACGCTTT ACCAGCTAAT 
    CCCGCACCGC AAGCGAAGCT CTGCGTCATC GAAACCAAGA AAAACCATTC 
    CGTATCCGTC ACCTCCTCAT CAACAGCGTC ATCCGACGGA GCAACACCAC 
    CGGAGATCAA CGAGTTAAGC TCTCTCAACA CTTTTTTCCT GTACTCCTGA 
    TCCGCCGGAG TAGAAAACGG CGGCGAACTC GATCTCCGTC TCGGGTTTGC 
    TTTATCTTCT TCACCTTTGT AATAACCATC TCCCCATCCG AGCACGGAGG 
    CGCCGGAGAA ATCATACGAC GGTTGCCAGA ATATAGCGTA GGTCCAACCT 
    TCGTGTGTTC CTTCAATCAA AGCTTGTAAA CGTTGCTGAA GAGTCTCTTG 
    ATTAAATCCC GCCTGTGCCG GAATCTCCAT CGCCGGCGTC GGAGTTGTTT 
    CAGTCGTCGC CGTCGTGGTT GTCGTCGACG CCGGAGGCCA TAAAGTTGAG 
    ATATCGGAAG AGCTCATGAA AGCTTCCATC ATAGAAGCGT TGTCGTCGGT 
    GGTCCAAAGA TTCATCGTTG GTTGTAGCCG GTAATCAGTC ATTCCATAAA 
    CCGGTGACCG GTAAAAAAAA AACACGTTTT TAATGAGAGA GAGAGAGATA 
    GGAGAAAGTC TTCGTAGTCG GTTCTCGAGA ACCGTGGTAG CAACAGCATT 
    GCCTTCTTTC AAAAGAACCT TAAACACAAA TCCAAACACT TCTCTTGTAA 
    TCTTACGAGC TTCAACAACC AATACCCTTC TCGATTTCCC AAAAAACGCA 
    AGCAACACAA CCACCGATAT CCAGATCACC ATAACCGCCG GAACCGCAAC 
    CGCAGCCGCC GCAACCATCG ACATGGCTCC AAACACAGCT CCTAACACCA 
    CAGACGCGTA AACCGCCGGT AATCTTGACG GAGACGGCGA TGACGTGTAC 
    TGGAGCTTGT ACCAGCTAAG CACAGATGTG AGAAAGTTCC ATGAGGAAGC 
    CAGGAGAATC GCGTAGACAG CTACAAAGAG ACAAACCCAT GTCCGTCTCT 
    TGCTCATGAT TCGCATAAAG ATAAGGTACG ATCTTGGAGG AGAGCCATTC 
    GATGTTCTTG GCGATCCTGT TGGATCCATC ATCGGCGATC TGATTGAGAT 
    TTTTTATTGA GGGATTTTTT CTTTCTTTGT GTTGGAAATT GAAATCTCCG 
    TGATTTGAGA TTTGTGCTGA AGAACTAGAA GAAGAAGAAG AAGAAGAAGA 
    AGAAGAGAGA GAGCACAAAA AAAAAAGTGA AAGTCTTCAG ATTTGGGGAA 
    AATAGATTAG TTCACGTGAG TCCCACTCTC ATGTTAAAGC GCGTGTTAAT 
    CACTCGTTGG TTTAGAGGCT TGTAGTGGAG TACACGCGCT TAAGTTTCGT 
    TTTATTTATT GATTTCCCCC AAAAGAGACC AGACATGGAA ATTAGGAACA 
    AATGAATATA CATGGAAACT GCGTGAACTC ACTCTGATCA AAAATATTAT 
    TATTTCCAAA AAAAAAA

    Gene models with high sequence identity

    1. AT1G32640.1 [+] show detail - Basic helix-loop-helix (bHLH) DNA-binding family protein
      E-value: 0; Score: 99.94

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Helix-loop-helix DNA-binding 2.3e-09
    Coil coiled-coil 0
    HMMSmart Helix-loop-helix DNA-binding domain 8.2e-16
    superfamily Helix-loop-helix DNA-binding 1.9e-15
    ProfileScan Helix-loop-helix DNA-binding domain 14.281
    HMMPfam Helix-loop-helix DNA-binding domain 4e-10
    HMMPanther MYC 1.6e-06

    See the detailed result >

    AT1G32640.1

    Model type
    Protein coding
    Short Description
    Basic helix-loop-helix (bHLH) DNA-binding family protein
    Curator Summary
    Encodes a MYC-related transcriptional activator with a typical DNA binding domain of a basic helix-loop-helix leucine zipper motif. Binds to an extended G-Box promoter motif. Its transcription is induced by dehydration stress and ABA treatment. Negative regulator of blue light
    Computational Description
    MYC2; FUNCTIONS IN: DNA binding, transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 13 processes; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: Basic helix-loop-helix (bHLH) DNA-binding family protein (TAIR:AT4G17880.1); Has 4078 Blast hits to 3762 proteins in 672 species: Archae - 2; Bacteria - 2; Metazoa - 761; Fungi - 108; Plants - 3150; Viruses - 25; Other Eukaryotes - 30 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR