F20518

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F20518

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F20518

Determination of introduced cDNA(s)

  • RAFL09-09-K20 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-09-K20 - Resource: pda05286

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-09-K20 - full reading
    AGAGTTAGAG AGAGAGAGAC CACGCCAGAT ATACCTTTCT TGTTTCACCG 
    GTTTTCATAC ACAAAAATGG CGGGCAGTGC CTCATTCGCC GCCGCATTAT
    TCATCGGACT CTCTCTTCTC TTCGCCGTCA CGGCTGAAGA TCCGTACAGA
    TTCTTTGAAT GGAACATAAC TTACGGCGAT ATATACCCAC TCGGTGTTCG
    CCAACAGGGT ATTTTGATCA ACGGGGCGTT TCCGGGACCG GACATTCATT
    CGGTTACTAA TGACAATCTC ATCATCAACG TCTACAATAG CCTCGACGAA
    CCTTTCCTTC TTTCATGGAA TGGAATTCAA CAGAGGAGGA ACTCTTTCGT
    TGATGGAGTG TATGGAACGA CATGCCCAAT CCCGCCGGGG AAGAACTACA
    CTTACATTCT TCAGATGAAG GATCAGATCG GAAGTTTTTA CTACTTCCCT
    TCTCTCGGCT TTCACAAAGC CGCCGGTGGA TTTGGTGGCA TTCGTATCCT
    CAGTCGTCCT AGAATCCCGG TCCCTTTCCC TGATCCCGCC GGAGATACCA
    CTGTCCTTAT CGGAGACTGG TACAAAGCAA ACCACACGGA TTTGAGAGCA
    CAGCTTGATA ATGGTAAGAA GCTTCCTTTA CCAGACGGCA TCCTCATCAA
    TGGTCGTTCA AGTGGTGCAA CTCTTAATGT TGAACAAGGT AAGACATACA
    GGTTTAGAAT ATCCAATGTA GGGTTACAAG ACTCTCTCAA CTTCCGCTTT
    CAAGACCATA AGATGAAAGT GGTGGAAGTC GAAGGAACAC ACACTCTTCA
    GACTACTTTC TCTTCACTAG ATGTTCATGT TGGACAATCT TACTCAGTCC
    TTGTAACCGC GGACCAGACT CCACGGGATT ATTACGTGGT CGTCTCTTCT
    CGGTTTACCT CAAATGTCCT TACTACCACG GGTATTTTCC GATACAGTAA
    TTCTGCTGGT GGTGTTTCTG GACCTATTCC TGGTGGACCT ACCATTCAAA
    TCGACTGGTC CTTGAACCAG GCTCGAGCCA TCAGGACTAA CCTTTCAGCG
    AGCGGACCAA GGCCAAATCC ACAAGGATCG TACCACTACG GTATGATAAA
    CACTACAAGA ACGATCAGAC TTGCTAGCTC TGCTGGTCAG GTTGATGGGA
    AGCAACGATA CGCTGTGAAC AGTGTCTCAT TCAAACCCGC AGACACTCCT
    CTGAAAATCG CGGACTACTT CAAGATTGAC GGTGTTTACA GAAGTGGAAG
    CATACAGTAC CAACCCACTG GTGGAGGAAT ATACCTCGAC ACATCTGTTA
    TGCAAGTTGA TTACAGAACC TTTGTGGAGA TTATTTTCGA AAATTCTGAG
    GATATTGTCC AGAGCTGGCA TCTTGATGGT TACTCTTTCT GGGTTGTTGG
    AATGGATGGT GGACAGTGGA GTCCAGATAG TAGGAACGAG TATAACCTAC
    GCGATGCAGT CGCTCGCTGC ACCGTTCAGG TATACCCAAG CTCATGGACG
    GCTATATTGA TAGCACTCGA CAACGTAGGA ATGTGGAATC TAAGATCCGA
    GTTCTGGGCG AGGCAATACT TAGGACAACA ATTGTATTTA CGTGTGTACA
    CACCCTCAAC TTCTCTCAGA GATGAATATC CAATCCCCAA GAACGCTCTT
    CTCTGCGGGA GAGCCAGTGG TCGCAGCACC AGACCGCTTT GAGCTGGTGG
    TTAGATATAG AAATGACGGA GAGATGGTCA GCCAAACCAG CTGACGCGTT
    CTTGAGGCGG GTTTCTTGTT TTATACACAT TCTTCATTTT GCTAATGAAT
    GAGAAGAGTT TATGTTAAAA TCAGTATATC AGTTTGTAAC GATCTCAGCT
    CGAGGTCTCA TTCTTGATTC TTATATTCTT TCTTTTTCTA TGGAACGAAA
    CATTTATTCA ATATAATTCC ACAGTTTCAT CGTG

    Gene models with high sequence identity

    1. AT1G76160.1 [+] show detail - SKU5 similar 5
      E-value: 0; Score: 99.95

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther PECTINESTERASE 0
    HMMPanther MULTI-COPPER OXIDASE 0
    superfamily Cupredoxin 6.8e-47
    superfamily Cupredoxin 1.7e-40
    superfamily Cupredoxin 5.8e-38
    HMMPfam Multicopper oxidase, type 1 6.2e-43
    HMMPfam Multicopper oxidase, type 3 1.4e-32
    HMMPfam Multicopper oxidase, type 2 1.6e-28
    Gene3D Cupredoxin 5.6e-34
    Gene3D Cupredoxin 1.4e-47
    Gene3D Cupredoxin 6.2e-57

    See the detailed result >

    AT1G76160.1

    Model type
    Protein coding
    Short Description
    SKU5 similar 5
    Computational Description
    SKU5 similar 5 (sks5); FUNCTIONS IN: oxidoreductase activity, copper ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: apoplast, cell wall, plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: SKU5-similar 6 (TAIR:AT1G41830.1); Has 5094 Blast hits to 5026 proteins in 887 species: Archae - 12; Bacteria - 1432; Metazoa - 265; Fungi - 1965; Plants - 1269; Viruses - 0; Other Eukaryotes - 151 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR