F19903

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F19903

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • increased size (PATO:0000586)
    (Cauline leaf::Shape::large)
rosette leaf (PO:0000014)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F19903

Determination of introduced cDNA(s)

  • RAFL05-09-F21 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-09-F21 - Resource: pda01159

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-09-F21 - full reading 
    GACGTTTTTG TTCTTCGAAA TTCAAATTCA CCCAGAAAAA ATCTCAATCC 
    GCGATGGTTG AAGAATCAGC TTCTGCGTCG GAAGCTTCGG TGATACAAAC 
    CCTAACCGAG CCGGCGACGG AGATTGCGCA AACCCTAGAA CCTAACCTAG 
    CCTCAATCGA AGCCACCGTC GAATCGGTTG TTCAGGGAGG CACTGAATCG 
    ACTTGTAACA ACGACGCTAA TAACAACAAC GCCGCTGACA GTGCTGCTAC 
    TGAGGTTTGT GATGAGGAGC GTGAGAAGAC GCTTGAGTTC GCTGAGGAAT 
    TGACGGAGAA AGGCTCTGTG TTTTTGAAAG AGAACGATTT CGCTGAAGCC 
    GTCGATTGCT TCAGCCGTGC TCTCGAAATC AGGGTTGCAC ATTATGGTGA 
    ACTTGATGCT GAGTGTATAA ACGCATACTA TCGATATGGA TTAGCTCTCC 
    TGGCAAAGGC TCAAGCTGAA GCTGATCCAC TTGGGAACAT GCCTAAGAAA 
    GAAGGTGAAG TTCAGCAAGA GTCCAGCAAT GGTGAATCGC TGGCTCCTTC 
    TGTTGTTTCA GGTGACCCAG AGAGACAAGG GAGTTCAAGT GGGCAAGAAG 
    GTTCTGGTGG TAAAGACCAA GGAGAGGATG GTGAAGATTG TCAAGATGAT 
    GACCTATCTG ATGCTGATGG TGATGCTGAT GAAGATGAGT CTGATTTGGA 
    TATGGCCTGG AAAATGCTGG ACATTGCTAG GGTTATTACT GACAAACAGT 
    CTACTGAGAC AATGGAAAAA GTGGATATAC TCTGTTCGCT TGCTGAAGTG 
    TCCTTGGAAA GAGAGGACAT TGAGTCTTCC CTGTCTGACT ACAAGAATGC 
    ATTATCCATC TTAGAGAGAC TGGTTGAGCC CGACAGTCGA CGCACAGCTG 
    AATTAAACTT CCGCATCTGC ATTTGTCTTG AGACTGGATG TCAGCCTAAG 
    GAAGCAATAC CATATTGTCA AAAAGCTTTG TTAATATGCA AAGCTCGGAT 
    GGAGAGGCTC AGTAATGAAA TCAAAGGTGC ATCTGGTTCA GCAACTTCCT 
    CAACCGTCTC TGAAATAGAT GAAGGCATCC AACAATCATC CAATGTTCCT 
    TACATTGATA AATCTGCTTC AGACAAAGAA GTTGAGATCG GAGACTTAGC 
    TGGTCTCGCT GAAGATCTAG AAAAGAAGCT TGAGGATTTA AAACAACAAG 
    CAGAGAACCC AAAGCAGGTT CTTGCTGAGC TAATGGGCAT GGTATCAGCT 
    AAGCCAAATG CCAGTGACAA GGTTGTTCCT GCTGCTGCTG AAATGAGCTC 
    TTCTAGGATG GGAACTGTGA ACACCAATTT CGGGAAAGAT TTAGAGTCGC 
    CTACAGTCTC AACCGCTCAT ACCGGTGCAG CAGGAGGAGG AGCAGCATCA 
    GGTGTTACTC ACTTGGGTGT TGTTGGAAGA GGAGTGAAGA GAGTTTTGAT 
    GAATACAACC TCGATTGAAT CAAGTGCATC AAAGAAACCA GCTCTAGAGT 
    TTTCAGACAA AGCAGATGGC AACTCCTCTT GAAACCGGAA AAAGGTATAA 
    AAATTCCTGT TACTAGTGAA GTATCTAACC TAAGAAAACT GAGAAAAACA 
    TTTGGTATCT TCCTCATGAA TCTTCCAAGA CTAGATTTTC AGGTTCATGT 
    TTTGTAATGG AGTCCGTACT TGCTACTTTT TTAAATCGCT GAGATATTTT 
    TTATTAAAAA AAAAAAAAAA A

    Gene models with high sequence identity

    1. AT4G37210.1 [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily TPR-like 5.8e-12
    Gene3D Tetratricopeptide-like helical 4.6e-05
    ProfileScan Tetratricopeptide repeat 9.883
    ProfileScan Tetratricopeptide repeat 6.195
    ProfileScan Tetratricopeptide repeat-containing 9.867
    HMMSmart Tetratricopeptide repeat 0.003
    HMMSmart Tetratricopeptide repeat 11
    HMMSmart Tetratricopeptide repeat 86
    Coil coiled-coil 0
    Coil coiled-coil 0
    HMMPanther HISTONE BINDING PROTEIN-RELATED 1.7e-144
    HMMPanther NUCLEAR AUTOANTIGENIC SPERM PROTEIN (NASP)-RE 1.7e-144
    HMMPfam Tetratricopeptide TPR-1 4.3e-05

    See the detailed result >

    AT4G37210.1

    Model type
    Protein coding
    Short Description
    Tetratricopeptide repeat (TPR)-like superfamily protein
    Computational Description
    Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR