F19109

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F19109

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F19109

Determination of introduced cDNA(s)

  • RAFL04-16-O12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-16-O12 - Resource: pda02336

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-16-O12 - full reading 
    AAGAGTGGTG TAGTGAGAGA AGAAAGATAG AGAAAAAAAA TGGGAGGCAA 
    AGGTGTGATG ATGGTGGCGA TACTTTGCCT TTGGGCACTC TCTGCAACAT 
    CTGAAGCAGT AACAGAGGCT GAGCCAGGTT TGATGATGAA CTTCTACAAG 
    GACACGTGTC CTCAGGCCGA AGACATCGTC CGTGAACAAG TCAAACTCCT 
    CTACAAACGC CACAAGAACA CCGCTTTCTC TTGGCTCCGT AACATCTTCC 
    ATGACTGCGC CGTTGAGTCA TGTGATGCGT CGCTTTTGCT GGATTCGACA 
    AGAAGAGAGC TAGGAGAGAA AGAACACGAC AGGAGCTTCG GACTTAGAAA 
    CTTTAGGTAC ATCGAGGAGA TCAAGGAAGC TCTCGAGAGG GAGTGTCCTG 
    GTGTTGTCTC ATGTTCTGAC ATTCTCGTCT TGTCCGCAAG AGAAGGCATC 
    GAAGCAGTAG GAGGACCTTA TATTCCTTTG AAGACAGGAA GGAGAGATGG 
    ACTTAAAAGC AGGACGGATA TGCTCGAGTC ATATCTTCCC GACCACAACG 
    AGAGTATCTC CGTCGTTCTT GAAAAGTTCA AATCCATCGG TATCGACACT 
    CCCGGCCTCG TCGCCCTCCT AGGGTCACAC AGCGTGGGAA GAACTCACTG 
    TGTCAAGCTG GTCCATCGTT TGTACCCTGA GGTGGACCCG TCCTTAAACC 
    CGGACCACGT CCCTCACATG CTACACAAGT GTCCTGACTC GATCCCTGAC 
    CCAAAGGCGG TCCAGTACGT GCGTAACGAC CGTGGCACCC CCATGGTGCT 
    AGACAACAAT TACTACCGTA ACATCCTAGA CAACAAGGGT TTGCTCCTTG 
    TGGACCATCA GCTCGCACAC GACAAACGAA CCAGACCAAT CGTTAAGAAG 
    ATGGCTAAGG ACCAGGCCTA CTTCTTCAAG GAGTTCACTA GGGCAATCCA 
    GATCTTATCC GAGAACAACC CCTTGACTGG CTCTAAGGGT GAGATCAGGA 
    AGCAATGTAA TCTCGCAAAC AAGAACCATT GAAGTTGGAA AAAGTGAGAA 
    AGACAGGGGC TCTGGTGTGT TGAGTTCTCT GCTTGGTACG AACCAAGATG 
    AATAAAAAAA TCTTTTAAGT TAAATCAAAG AAAGGGTGAT GATGAATACA 
    TCATGGTAGT GACCACCTCC TTCTTTTGTG TGTTCAGCCT TAATGCTTTA 
    ATTATGATGT TAGTGGCTTT GAGTTATTTA ATCTAAATGT TGGCTCTTCG 
    TT

    Gene models with high sequence identity

    1. AT4G21960.1 [+] show detail - Peroxidase superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 2.7e-47
    FPrintScan Plant peroxidase 2.4e-34
    FPrintScan Plant peroxidase 2.4e-34
    FPrintScan Plant peroxidase 2.4e-34
    FPrintScan Plant peroxidase 2.4e-34
    FPrintScan Plant peroxidase 2.4e-34
    FPrintScan Plant peroxidase 2.4e-34
    FPrintScan Plant peroxidase 2.4e-34
    FPrintScan Plant peroxidase 2.4e-34
    FPrintScan Plant peroxidase 2.4e-34
    FPrintScan Haem peroxidase, plant/fungal/bacterial 4.6e-24
    FPrintScan Haem peroxidase, plant/fungal/bacterial 4.6e-24
    FPrintScan Haem peroxidase, plant/fungal/bacterial 4.6e-24
    FPrintScan Haem peroxidase, plant/fungal/bacterial 4.6e-24
    FPrintScan Haem peroxidase, plant/fungal/bacterial 4.6e-24
    HMMPfam Haem peroxidase, plant/fungal/bacterial 4.8e-60
    superfamily Haem peroxidase 2.7e-89
    ProfileScan Haem peroxidase, plant/fungal/bacterial 66.939

    See the detailed result >

    AT4G21960.1

    Model type
    Protein coding
    Short Description
    Peroxidase superfamily protein
    Curator Summary
    Encodes AT4g21960 (AT4g21960/T8O5_170).
    Computational Description
    PRXR1; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress, oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT2G37130.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR