F18845

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F18845

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F18845

Determination of introduced cDNA(s)

  • RAFL09-06-K07 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-06-K07 - Resource: pda05103

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-06-K07 - full reading
    AAGAAAAAAT CTATCTCCGC CATGAACGCG AGAGCTCTTC TTTGCTCTTC 
    AAATATTCAC TCTCTCTACA CTTCAAATCG TCCACCTGAA AAAACCTCTT
    CTTCTCGCAG CCTCCGTAAT CTCAAACCAT CTCCAAAGTC GTTACGGGTA
    TGGATCTACC CGCGAAATAG GTCCAGTGTT TTCCGGGTAT TAGTTCGGAG
    CTCCGACAAG AGTGAAAGCA GTAATTCGTA TTACGTAGAA GGAGATAAAG
    TAAGTGGAAA CAATGACGTC GTTTCTGATT CGCCTAGCTC TATCGTCCTC
    CCATGGTGGG AAGAGTTTCC GAAGCGGTGG GTGATTGTGT TACTCTGTTT
    CTCAGCTTTT CTTCTCTGCA ATATGGACAG AGTGAATATG AGTATAGCTA
    TACTTCCGAT GTCAGCTGAG TATGGTTGGA ATCCAGCAAC AGTTGGTCTG
    ATTCAGTCTT CTTTCTTCTG GGGTTACCTT CTTACACAGA TAGCTGGTGG
    AATTTGGGCA GACACTGTAG GAGGGAAAAG GGTTCTTGGA TTCGGTGTTA
    TTTGGTGGTC AATCGCTACA ATTCTCACTC CTGTAGCTGC TAAACTCGGT
    CTTCCTTACT TGCTCGTTGT TCGTGCTTTC ATGGGAGTTG GAGAGGGTGT
    TGCAATGCCT GCTATGAATA ATATATTGTC GAAGTGGGTT CCTGTGCAAG
    AGAGAAGCAG ATCACTCGCG CTTGTTTACA GCGGAATGTA CCTTGGATCT
    GTCACCGGTT TAGCCTTTTC GCCTTTCTTG ATTCATCAAT TTGGATGGCC
    TTCTGTGTTT TATTCTTTCG GGTCTCTTGG AACTGTATGG TTGACTCTGT
    GGCTAACTAA GGCAGAGAGT TCACCATTAG AAGATCCAAC ATTGCTCCCT
    GAAGAAAGAA AGCTAATTGC AGACAACTGT GCTAGCAAAG AGCCAGTGAA
    GTCGATCCCG CGGAGGCTGA TATTGTCGAA ACCACCGGTT TGGGCTCTCA
    TCAGTTGCCA CTTTTGTCAC AACTGGGGAA CATTCATTCT CTTAACATGG
    ATGCCAACTT ATTACCATCA AGTGCTGAAG TTCAACCTTA TGGAGTCAGG
    ACTTCTCTCT GTATTTCCAT GGATGACAAT GGCAATATCT GCAAATGCCG
    GTGGATGGAT TGCCGATACA CTTGTCAGCC GAGGTTTCTC TGTCACGAAT
    GTCCGCAAGA TAATGCAAAC AATAGGGTTT CTTGGACCAG CGTTCTTCCT
    AACACAGCTG AAACACATAG ATTCTCCTAC AATGGCTGTT TTGTGCATGG
    CTTGTAGTCA GGGGACTGAT GCGTTTTCAC AGTCTGGTCT ATACTCTAAC
    CATCAAGACA TCGCTCCAAG ATACTCTGGA GTGTTACTTG GTTTGTCTAA
    TACTGCTGGA GTACTTGCCG GAGTTCTTGG CACAGCTGCG ACTGGTCACA
    TACTACAACA CGGTTCTTGG GATGACGTTT TCACGATTTC GGTCGGTCTT
    TACCTCGTTG GGACCGTCAT TTGGAACCTA TTTTCAACCG GAGAGAAGAT
    AATCGATTGA TCCATTCCGA GAATAGTAAA TAGTTCGGCT CCAAGACCTC
    TCATCAGGTG CAACTTCACC TCACGCCAGT CTCTGATTAT ACAAGTATCA
    TTGCAGTCTG AGAGCTAGCC GGAATATTCC TTTTTTGCCA GAAAATTCTT
    CAGGATCTTT CTGCTCGTTG ATTTAGGCCA AACGCATATG AATAATACTT
    TGTAGATGAA AGATATACAG ATGATTTTTT GTAAATAAAC AAAGCTCACA
    CTTTCTCAAG ACT

    Gene models with high sequence identity

    1. AT2G29650.1 [+] show detail - phosphate transporter 4;1
      E-value: 0; Score: 99.94

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Major facilitator superfamily MFS-1 2.4e-62
    ProfileScan MFS 24.798
    superfamily Major facilitator superfamily, general substrate transporter 1.7e-86
    HMMPanther SODIUM-DEPENDENT PHOSPHATE TRANSPORTER-RELATE 7.5e-305
    HMMPanther SODIUM-DEPENDENT PHOSPHATE TRANSPORTERS 7.5e-305

    See the detailed result >

    AT2G29650.1

    Model type
    Protein coding
    Short Description
    phosphate transporter 4;1
    Curator Summary
    Encodes an inorganic phosphate transporter (PHT4;1) that is localized to the thylakoid membrane.
    Computational Description
    phosphate transporter 4;1 (PHT4;1); CONTAINS InterPro DOMAIN/s: Major facilitator superfamily (InterPro:IPR020846), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT4G00370.1); Has 36081 Blast hits to 35982 proteins in 2442 species: Archae - 467; Bacteria - 29522; Metazoa - 2463; Fungi - 1237; Plants - 437; Viruses - 0; Other Eukaryotes - 1955 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR