F17932

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F17932

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • upturned (PATO:0002031)
    (Rosette leaf::Shape::hyponastic)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
T2  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • upturned (PATO:0002031)
    (Rosette leaf::Shape::hyponastic)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F17932

Determination of introduced cDNA(s)

  • RAFL09-21-K18 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-21-K18 - Resource: pda08029

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-21-K18 - full reading
    AAAACCCTAA AAAATCCAAC CAGAAGGGTA GAAGCTCTCT CGCCGACAAT 
    TACCGGCTAC AAGGTTTCTC TGCTCGTCAA CGTTCTCTGA ATTAGTGGTA
    TTGAAAGATG AGCTTATCTC AGAATGCTCC GAAAAGTAAG GGTATTAAAA
    GAGAGGAGCT CAAGAAACAG TACGAAGATG TTGAAGATGA GGAAGAGATT
    GGGTCCGATG ATGATCTCAC TAGGGGAAAG AGAAGAAAGA CAGAGAAGGA
    GAAGCAGAAG CTAGAAGAAT CGGAACTGGT TGAAATGAAA AAGCTTGAGA
    ATTTGATATT CGGGTCACTC TACTCTCCTG TTACGTTTGG TAAGGAAGAA
    GAAGAAGATG GTTCGGCTTT GTTTCATGTA GACCGTTCTG CTGTGAGGCA
    GATTCCTGAC TACGAGGATG ATGGTGATGA TGATGAAGAG CTTTCTGATG
    AAGAGAATGG TCAAGTTGTG GCAATTAGAA AGGGAGAAGC TGCCTGGGAG
    GATGAAGAAG AGAAACAGAT AAACGTTGAT ATAGCTAGTG TCAACCGTCT
    AAGGAAGCTA AGGAAAGAGG AGAATGAGGG TTTGATCTCT GGGTCTGAGT
    ACATTGCAAG GCTGAGGGCT CATCATGCTA AGCTAAACCC GGGGACTGAT
    TGGGCTCGGC CAGATTCTCA AATAGTTGAT GGAGAGTCTT CAGATGATGA
    TGATACTCAG GATGGAGGAG TTGATGATAT CCTTCGAACG AATGAAGATC
    TTGTGGTGAA GTCTCGTGGT AACAAGCTGT GTGCTGGTCG TCTTGAATAC
    TCTAAGCTTG TGGATGCCAA TGCAGCGGAT CCTTCAAATG GTCCAATAAA
    CTCTGTCCAC TTCCATCAGA ACGCTCAGCT GCTTCTCACT GCTGGATTGG
    ATCGACGGTT AAGGTTTTTC CAGATTGATG GAAAGAGGAA CACCAAGATC
    CAGAGCATTT TTCTTGAGGA CTGTCCCATT CGTAAAGCGG CTTTCTTGCC
    CAATGGCTCT CAGGTCATTG TCTCCGGAAG AAGAAAGTTC TTTTACAGCT
    TTGATTTGGA GAAGGCAAAG TTTGACAAAA TTGGCCCTTT GGTTGGTAGA
    GAGGAGAAAA GCTTGGAATA TTTCGAGGTG TCACAAGACT CTAACACCAT
    AGCTTTTGTT GGCAACGAAG GTTATATCTT ACTTGTGTCT ACAAAAACAA
    AAGAGCTGAT AGGAACCCTA AAGATGAATG GTTCAGTTAG GTCTTTAGCA
    TTTAGTGAAG ATGGGAAGCA TTTGCTGAGC TCAGGAGGTG ACGGGCAAGT
    CTATGTCTGG GATCTGAGAA CAATGAAATG CTTATACAAA GGCGTGGATG
    AAGGCAGCAC TTGTGGCACT TCTCTTTGCA GTTCGCTTAA CGGAGCATTG
    TTTGCTTCTG GAACCGACAG AGGAATCGTA AACATTTACA AGAAATCTGA
    GTTTGTGGGA GGCAAAAGAA AGCCGATAAA GACAGTGGAC AATCTCACAT
    CCAAGATAGA TTTCATGAAG TTCAACCATG ATGCTCAGAT TCTAGCTATA
    GTCTCTACAA TGAACAAAAA CAGTGTAAAG CTAGTCCATG TTCCATCCCT
    AACCGTCTTC TCAAACTGGC CGCCACCAAA CAGCACAATG CATTACCCTC
    GCTGCCTAGA CTTCAGCCCC GGAAGTGGCT TCATGGCTAT GGGGAACGCT
    GCCGGAAAAG TTTTGCTGTA TAAACTCCAT CATTACCAGA ATGCTTGAAG
    TGGTCTTTAA CAAGGGCAGT TTTGGGATTG TTGTGTTTCC TCTTTTTTTG
    TCGCAAGTAC TCTTTATGTT ATCAATTTTC CTATCCAATT ATCGATCAAT
    GAAAAATTTT CTTTCTGATT G

    Gene models with high sequence identity

    1. AT5G14050.1 [+] show detail - Transducin/WD40 repeat-like superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan WD40 repeat 2 13.683
    ProfileScan WD40-repeat-containing domain 12.657
    PatternScan WD40 repeat, conserved site 0
    Coil coiled-coil 0
    HMMPanther WD-REPEAT PROTEIN-RELATED 9.9e-229
    Gene3D WD40/YVTN repeat-like-containing domain 1.3e-32
    HMMSmart WD40 repeat 1.2
    HMMSmart WD40 repeat 120
    HMMSmart WD40 repeat 1.1e-08
    HMMSmart WD40 repeat 98
    HMMSmart WD40 repeat 190
    HMMPfam WD40 repeat, subgroup 0.01
    HMMPfam WD40 repeat, subgroup 6.5e-07
    superfamily WD40 repeat-like-containing domain 4.8e-45

    See the detailed result >

    AT5G14050.1

    Model type
    Protein coding
    Short Description
    Transducin/WD40 repeat-like superfamily protein
    Computational Description
    Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: TBP-associated factor 5 (TAIR:AT5G25150.1); Has 6115 Blast hits to 4690 proteins in 400 species: Archae - 26; Bacteria - 2036; Metazoa - 1593; Fungi - 1149; Plants - 369; Viruses - 2; Other Eukaryotes - 940 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR