F16829

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F16829

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F16829

Determination of introduced cDNA(s)

  • RAFL03-09-N15 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL03-09-N15 - Resource: pda00260

    full reading [+] show sequence

    Nucleotide sequence: RAFL03-09-N15 - full reading
    ACTCCAACAG AGAAGCAAAA GAAAAAAAAG CTATTGTTTG AAAGAAGAAG 
    AAGTTAACTA TGGCAAAGGA TGTGGAAGCC GTTCCCGGAG AAGGATTTCA
    GACAAGAGAC TATCAAGATC CGCCACCAGC TCCGTTTATT GATGGAGCGG
    AGCTAAAGAA GTGGTCTTTC TACAGAGCAG TTATCGCAGA GTTCGTAGCC
    ACTCTCCTCT TCTTATACAT CACCGTTTTG ACAGTCATCG GTTACAAGAT
    TCAGTCCGAT ACTGATGCCG GTGGCGTAGA TTGCGGCGGA GTTGGAATCC
    TCGGTATCGC TTGGGCCTTT GGTGGTATGA TCTTCATCCT CGTCTACTGC
    ACCGCCGGTA TCTCTGGTGG TCACATTAAC CCAGCGGTGA CATTTGGGCT
    ATTCTTGGCA CGTAAAGTGT CGTTACCTAG GGCCCTATTG TACATAATCG
    CTCAGTGTTT GGGTGCGATT TGTGGAGTTG GTTTTGTCAA AGCCTTCCAA
    AGCTCTTACT ACACCCGTTA CGGAGGTGGA GCCAACTCTC TAGCCGATGG
    CTACAGCACA GGGACCGGTC TAGCCGCAGA GATCATTGGT ACTTTCGTTC
    TTGTCTACAC CGTCTTCTCT GCCACTGACC CCAAACGTAG TGCCAGAGAC
    TCCCACGTTC CGGTGTTGGC GCCACTTCCA ATCGGATTTG CCGTGTTCAT
    GGTACATTTG GCTACCATTC CCATTACCGG AACCGGAATT AACCCGGCAA
    GGAGTTTCGG AGCTGCCGTA ATCTACAACA AGAGCAAGCC ATGGGATGAC
    CACTGGATAT TTTGGGTTGG ACCATTCATT GGAGCTGCGA TAGCTGCATT
    CTACCACCAA TTCGTTCTGA GAGCTTCAGG TTCTAAGTCT CTTGGATCAT
    TCAGAAGTGC TGCCAACGTC TAAACACATC AAACCAGATT TCTCAAGAAT
    AAATGAAGTT GTGATCTCTC TGTACAAATC TAAATCAGTC ACTTGCAGTT
    TTCATTTCCC TTTCTTATAT TTGTGTTTTC CACTTGCTCT TTTGTGAATT
    TTCCTTCGGT GTAATTGTTT TTTCTTTCGC TTTTAAACGA GTGATTGGAA
    TTATAATCAA TGAAATCAAA GAGGTTCCT

    Gene models with high sequence identity

    1. AT3G53420.1 [+] show detail - plasma membrane intrinsic protein 2A
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Major intrinsic protein 6.5e-63
    HMMTigr Aquaporin 3.1e-88
    HMMPanther AQUAPORIN-RELATED 1e-190
    HMMPanther Major intrinsic protein 1e-190
    Gene3D Major intrinsic protein 2.3e-65
    FPrintScan Major intrinsic protein 6.5e-71
    FPrintScan Major intrinsic protein 6.5e-71
    FPrintScan Major intrinsic protein 6.5e-71
    FPrintScan Major intrinsic protein 6.5e-71
    FPrintScan Major intrinsic protein 6.5e-71
    FPrintScan Major intrinsic protein 6.5e-71
    HMMPfam Major intrinsic protein 3.3e-88
    PatternScan Major intrinsic protein, conserved site 0

    See the detailed result >

    AT3G53420.1

    Model type
    Protein coding
    Short Description
    plasma membrane intrinsic protein 2A
    Curator Summary
    a member of the plasma membrane intrinsic protein subfamily PIP2. localizes to the plasma membrane and exhibits water transport activity in Xenopus oocyte. expressed specifically in the vascular bundles and protein level increases slightly during leaf dev. When expressed in yeast cells can conduct hydrogen peroxide into those cells.
    Computational Description
    plasma membrane intrinsic protein 2A (PIP2A); FUNCTIONS IN: water channel activity; INVOLVED IN: response to water deprivation, response to salt stress, transport, hydrogen peroxide transmembrane transport, water transport; LOCATED IN: plasma membrane, chloroplast, vacuole, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: plasma membrane intrinsic protein 2 (TAIR:AT2G37170.1); Has 10900 Blast hits to 10884 proteins in 2233 species: Archae - 81; Bacteria - 5210; Metazoa - 1477; Fungi - 457; Plants - 2523; Viruses - 2; Other Eukaryotes - 1150 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR