F14148

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased size (PATO:0000586) (Seed::Shape::large) increased length (PATO:0000573) (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F14148

Determination of introduced cDNA(s)

RAFL04-16-O12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-16-O12 - Resource: pda02336

full reading [+] show sequence

AAGAGTGGTG TAGTGAGAGA AGAAAGATAG AGAAAAAAAA TGGGAGGCAA 
AGGTGTGATG ATGGTGGCGA TACTTTGCCT TTGGGCACTC TCTGCAACAT 
CTGAAGCAGT AACAGAGGCT GAGCCAGGTT TGATGATGAA CTTCTACAAG 
GACACGTGTC CTCAGGCCGA AGACATCGTC CGTGAACAAG TCAAACTCCT 
CTACAAACGC CACAAGAACA CCGCTTTCTC TTGGCTCCGT AACATCTTCC 
ATGACTGCGC CGTTGAGTCA TGTGATGCGT CGCTTTTGCT GGATTCGACA 
AGAAGAGAGC TAGGAGAGAA AGAACACGAC AGGAGCTTCG GACTTAGAAA 
CTTTAGGTAC ATCGAGGAGA TCAAGGAAGC TCTCGAGAGG GAGTGTCCTG 
GTGTTGTCTC ATGTTCTGAC ATTCTCGTCT TGTCCGCAAG AGAAGGCATC 
GAAGCAGTAG GAGGACCTTA TATTCCTTTG AAGACAGGAA GGAGAGATGG 
ACTTAAAAGC AGGACGGATA TGCTCGAGTC ATATCTTCCC GACCACAACG 
AGAGTATCTC CGTCGTTCTT GAAAAGTTCA AATCCATCGG TATCGACACT 
CCCGGCCTCG TCGCCCTCCT AGGGTCACAC AGCGTGGGAA GAACTCACTG 
TGTCAAGCTG GTCCATCGTT TGTACCCTGA GGTGGACCCG TCCTTAAACC 
CGGACCACGT CCCTCACATG CTACACAAGT GTCCTGACTC GATCCCTGAC 
CCAAAGGCGG TCCAGTACGT GCGTAACGAC CGTGGCACCC CCATGGTGCT 
AGACAACAAT TACTACCGTA ACATCCTAGA CAACAAGGGT TTGCTCCTTG 
TGGACCATCA GCTCGCACAC GACAAACGAA CCAGACCAAT CGTTAAGAAG 
ATGGCTAAGG ACCAGGCCTA CTTCTTCAAG GAGTTCACTA GGGCAATCCA 
GATCTTATCC GAGAACAACC CCTTGACTGG CTCTAAGGGT GAGATCAGGA 
AGCAATGTAA TCTCGCAAAC AAGAACCATT GAAGTTGGAA AAAGTGAGAA 
AGACAGGGGC TCTGGTGTGT TGAGTTCTCT GCTTGGTACG AACCAAGATG 
AATAAAAAAA TCTTTTAAGT TAAATCAAAG AAAGGGTGAT GATGAATACA 
TCATGGTAGT GACCACCTCC TTCTTTTGTG TGTTCAGCCT TAATGCTTTA 
ATTATGATGT TAGTGGCTTT GAGTTATTTA ATCTAAATGT TGGCTCTTCG 
TT

Gene models with high sequence identity

AT4G21960.1 [+] show detail - Peroxidase superfamily protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
Gene3D	no description	2.7e-47
FPrintScan	Plant peroxidase	2.4e-34
FPrintScan	Plant peroxidase	2.4e-34
FPrintScan	Plant peroxidase	2.4e-34
FPrintScan	Plant peroxidase	2.4e-34
FPrintScan	Plant peroxidase	2.4e-34
FPrintScan	Plant peroxidase	2.4e-34
FPrintScan	Plant peroxidase	2.4e-34
FPrintScan	Plant peroxidase	2.4e-34
FPrintScan	Plant peroxidase	2.4e-34
FPrintScan	Haem peroxidase, plant/fungal/bacterial	4.6e-24
FPrintScan	Haem peroxidase, plant/fungal/bacterial	4.6e-24
FPrintScan	Haem peroxidase, plant/fungal/bacterial	4.6e-24
FPrintScan	Haem peroxidase, plant/fungal/bacterial	4.6e-24
FPrintScan	Haem peroxidase, plant/fungal/bacterial	4.6e-24
HMMPfam	Haem peroxidase, plant/fungal/bacterial	4.8e-60
superfamily	Haem peroxidase	2.7e-89
ProfileScan	Haem peroxidase, plant/fungal/bacterial	66.939

See the detailed result >

AT4G21960.1

Model type: Protein coding
Short Description: Peroxidase superfamily protein
Curator Summary: Encodes AT4g21960 (AT4g21960/T8O5_170).
Computational Description: PRXR1; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress, oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT2G37130.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR