F12138

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F12138

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • present in fewer numbers in organism (PATO:0001997)
    (Cauline leaf::Number::few)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Other)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F12138

Determination of introduced cDNA(s)

  • RAFL14-21-M11 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL14-21-M11 - Resource: pda18335

    full reading [+] show sequence

    Nucleotide sequence: RAFL14-21-M11 - full reading 
    GTGTTTATCG TATGTTTCAC ACAGTACACG CTTCAGTGGG AGTTGTTGGG 
    TGATCGGTCC GAGGCGACAT ACAAGATGAC CGGAAACTCT TTTAACTCGA 
    TGAAAGATTT CCTGAAGCAG ACAGGCGGCT ATGCGGTAAT AGACGGAGGG 
    CTTGCAACGG AGTTCGAGAG ACATGGAGCA GATCTCAACG ATCCTCTCTG 
    GAGCGCCAAA TGCCTTGTCA CCTCTCCTCA CCTCATTCAC ACCGTGCATC 
    TCGATTACCT TGAAGCTGGT GCTGATATCA TCTCCAGCGC TTCTTATCAG 
    GCCACGATTC AGGGGTTTGA AGCAAAGGGA TTTTCTAGAG AAGAGAGCGA 
    ATCTTTGCTT AAAAAGAGCG TAGAAATAGC GACTGAAGCT CGGAACTCGT 
    ATTATGACAA ATGCGGAACT AGCTCTTCCA TGGATGATAA GATTCTCAAA 
    AAGCGCCCTA TATTAGTTGC AGCATCAGTT GGTAGCTACG GTGCATACTT 
    GGCTGATGGG TCTGAATACA GTGGAATCTA TGGTGATTCG ATCACGCTGG 
    AAAAGCTGAA GGATTTTCAC CGCAGACGAC TCCAAGTTCT GGCGGAATCT 
    GGTGCTGATT TAATAGCATT TGAGACCATT CCAAACAAGA TAGAGGCTCA 
    GGCATTTGCT GATCTATTAG AAGAGGGAGA TGTGAAGATT CCTGGGTGGT 
    TTTCATTCAA CTCAAAGGAT GGCGTAAACG TGGTTAGCGG GGATTCCATC 
    AAGGAGTGTA TCTCCATAGC TGAAAATTGT GAGAAAGTAG TGGCGGTTGG 
    AATCAACTGT ACCCCTCCAA GATTCATAGA GGGGCTAGTT TTGGAGATAG 
    AAAAGGTGAC AAGCAAGCCC ATACTAGTGT ACCCAAACAG CGGAGAAAGC 
    TATGATGCTG ATCGGAAGGA GTGGGTGGAA AACACCGGAG TTGGGGATGA 
    AGACTTTGTA TCATACGTAG AGAAATGGAT GGATGCAGGA GTGTCTCTCC 
    TGGGAGGTTG CTGCCGCACA ACACCAACCA CCATCAGAGC CATCCACAAG 
    AGACTCGTCA ACCGCAGATC TCTTTAGCAT TCAACTTCAC TCTCTTCTAT 
    GAATCTCTAG AACCTTGGCA ATAGATTTCT ACCAAAAACA TGAATGTTTG 
    TCTTCCCTTT GCCAATTACA AATCTAATTT CAAGGAAAAA AAAAA

    Gene models with high sequence identity

    1. AT3G63250.1 [+] show detail - homocysteine methyltransferase 2
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Homocysteine S-methyltransferase 49.193
    HMMPanther HOMOCYSTEINE S-METHYLTRANSFERASE 3.7e-43
    HMMPanther METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRA 3.7e-43
    HMMPfam Homocysteine S-methyltransferase 3.8e-88
    superfamily Homocysteine S-methyltransferase 4.8e-86
    Gene3D Homocysteine S-methyltransferase 9.2e-79

    See the detailed result >

    AT3G63250.1

    Model type
    Protein coding
    Short Description
    homocysteine methyltransferase 2
    Curator Summary
    Encodes a homocysteine methyltransferase (HMT). Among the three HMT coding genes in the genome, HMT2 is responsible for a significant proportion of HMT activity in the flower stalks and silique hulls. However, HMT2 does not significantly contribute to the total HMT activity in seeds.
    Computational Description
    homocysteine methyltransferase 2 (HMT2); CONTAINS InterPro DOMAIN/s: Homocysteine S-methyltransferase (InterPro:IPR003726); BEST Arabidopsis thaliana protein match is: homocysteine S-methyltransferase 3 (TAIR:AT3G22740.1); Has 6768 Blast hits to 6760 proteins in 1892 species: Archae - 4; Bacteria - 4264; Metazoa - 340; Fungi - 135; Plants - 163; Viruses - 0; Other Eukaryotes - 1862 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR