F11808

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F11808

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • epinastic (PATO:0000945)
    (Cauline leaf::Shape::epinastic)
  • dark green (PATO:0001249)
    (Cauline leaf::Color::dark)
rosette leaf (PO:0000014)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • dark green (PATO:0001249)
    (Stem::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F11808

Determination of introduced cDNA(s)

  • RAFL02-05-B07 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL02-05-B07 - Resource: pda00126

    full reading [+] show sequence

    Nucleotide sequence: RAFL02-05-B07 - full reading
    CTTCAAAAAA CTCTCCACTC AACTCTCTCT GGTCAGCTGT CTCTTCCCCA 
    TTCTCTAGGG TTTTCAAGCT CAACCTCAAG CTCCACTACG ATCTCTTCTT
    CTTCTCTAAT CTCAGTTGAA AGATGCAAGG TGTGATTCGA TCCTTCGTCT
    CCGGTGGAAA TGTTGTGAAA GGCTCTGTGC TGCAACATCT CCGTGTGATT
    AACCCGGCGA TTCAGCCTTC TGTGTTTTGT TCACGCTCTG AATCAACTCA
    ACCTGCACGT ATGGAGGAAT CTGGATTCGA GAGCACAACT ATTTCCGATG
    TCATGAAATC CAAAGGCAAA AGTGCTGATG GATCTTGGCT TTGGTGTACT
    ACTGATGACA CTGTTTATGA TGCTGTTAAA TCCATGACAC AACACAATGT
    TGGTGCCTTG GTGGTTGTGA AACCTGGTGA GCAACAAGCT CTTGCTGGTA
    TCATTACAGA GAGAGATTAT CTACGGAAGA TCATTGTGCA AGGGAGATCA
    TCCAAATCAA CAAAAGTTGG AGACATTATG ACTGAAGAGA ATAAGCTTAT
    CACTGTGACA CCGGAGACCA AGGTCTTGCG TGCTATGCAA CTGATGACAG
    ATAACCGAAT CAGGCATATT CCGGTAATCA AAGACAAGGG CATGATTGGA
    ATGGTGTCCA TAGGAGATGT TGTCCGTGCA GTGGTTCATG AGCATAGAGA
    GGAGCTTCAA CGCCTAAATG CGTATATTCA GGGAGGTTAC TAGATCTTGA
    ATAATGGAAA GAAAAGAGTT CCCTGTTGTG TCGTCTGGTC TTGTGCTGCT
    GAATCTGAAA AGCTTCCAGA TCAGTGTAAA TATGCAGTCC TCGTTGTTAT
    TGTTGTTGTT GTTGTGTTTG ATGTTTTGTG TTGTTTCGTT GTTTAACTTG
    TCAAAACTAA GGCCTTGTGC TGCTTCTCTT CTTGCGCTTA CTTAGCAAGA
    GAATAAAACC AAAAACTCTG ATCTC

    Gene models with high sequence identity

    1. AT5G10860.1 [+] show detail - Cystathionine beta-synthase (CBS) family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Cystathionine beta-synthase, core 2.4e-07
    HMMPfam Cystathionine beta-synthase, core 1.4e-12
    HMMSmart Cystathionine beta-synthase, core 0.00024
    HMMSmart Cystathionine beta-synthase, core 4.4e-09
    superfamily CBS-domain 4.8e-15
    superfamily CBS-domain 1.7e-09
    ProfileScan Cystathionine beta-synthase, core 10.844
    ProfileScan Cystathionine beta-synthase, core 13.666
    HMMPanther INOSINE-5-MONOPHOSPHATE DEHYDROGENASE RELATED 1.5e-38
    HMMPanther INOSINE-5-MONOPHOSPHATE DEHYDROGENASE RELATED 1.5e-38

    See the detailed result >

    AT5G10860.1

    Model type
    Protein coding
    Short Description
    Cystathionine beta-synthase (CBS) family protein
    Computational Description
    Cystathionine beta-synthase (CBS) family protein; FUNCTIONS IN: cobalt ion binding; INVOLVED IN: response to salt stress; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: Cystathionine beta-synthase (CBS) family protein (TAIR:AT1G47271.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR