F11026

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F11026

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
flower (PO:0009046)
  • abnormal (PATO:0000460)
    (Flower::Others)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F11026

Determination of introduced cDNA(s)

  • RAFL09-62-F11 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-62-F11 - Resource: pda12358

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-62-F11 - full reading
    AGAGAGACAT TTCGCCATTA GATCCTCTTT TTTTTCTTCG TAGGTCGAAC 
    GAAATTTTGT GTTTCGTTGA GGAGAAAATT GAGCCGTGTT TGTGTTGAGA
    TGTCTATGAT CGATGAGCCG TTGTACCCAA TCGCCGTACT TATAGACGAG
    TTAAAAAACG ATGATATTCA GCTAAGATTG AATTCCATCA GAAGGCTTTC
    TACGATCGCT CGTGCTCTTG GGGAAGAGAG GACTAGAAAG GAATTGATCC
    CTTTCCTTAG CGAAAACAAT GACGATGATG ATGAGGTTTT ATTAGCAATG
    GCTGAAGAAT TGGGTGTGTT TATTCCTTAT GTTGGTGGTG TTGAGTATGC
    ACATGTTCTT CTTCCACCTT TGGAAACTCT TTCGACTGTC GAAGAAACTT
    GTGTTAGGGA GAAAGCTGTT GAGTCGCTTT GTAGAGTTGG CTCTCAGATG
    AGGGAGAGTG ACTTGGTTGA TCATTTCATT TCGTTAGTTA AGCGACTTGC
    CGCTGGTGAG TGGTTCACAG CTAGAGTATC GGCTTGCGGT GTTTTCCATA
    TTGCATACCC GAGCGCGCCG GATATGTTGA AGACTGAGTT AAGATCGTTG
    TATACTCAGC TTTGTCAGGA TGATATGCCG ATGGTAAGGA GAGCTGCAGC
    AACTAATCTT GGGAAATTTG CTGCTACGGT TGAATCAGCG CATTTGAAGA
    CCGACGTTAT GTCCATGTTT GAGGATCTTA CTCAAGATGA TCAAGATTCT
    GTTAGATTAT TGGCCGTTGA GGGTTGTGCT GCTCTTGGGA AATTGTTGGA
    GCCTCAGGAT TGTGTCCAAC ACATTCTTCC CGTGATTGTT AATTTCTCGC
    AGGATAAGTC TTGGCGTGTG CGCTATATGG TTGCAAATCA ACTCTACGAG
    CTTTGTGAAG CCGTGGGACC TGAGCCTACT AGGACGGAGC TGGTGCCTGC
    ATATGTGCGC CTACTTCGTG ATAATGAAGC TGAAGTACGC ATAGCAGCTG
    CCGGAAAAGT TACAAAGTTT TGTCGGATTC TAAACCCTGA AATTGCTATC
    CAGCACATTC TCCCCTGTGT GAAGGAGCTA TCATCAGACT CTTCTCAGCA
    TGTCAGATCT GCATTGGCCT CAGTTATAAT GGGAATGGCT CCAGTCTTGG
    GTAAGGATGC AACAATTGAG CATCTCCTTC CAATCTTTCT TTCTCTATTG
    AAAGATGAGT TCCCGGATGT ACGCTTGAAC ATTATCAGCA AACTTGACCA
    AGTGAATCAG GTTATTGGGA TTGATCTACT ATCACAATCC TTGTTGCCAG
    CTATTGTAGA ACTTGCTGAA GATAGACACT GGAGAGTAAG ACTTGCTATA
    ATCGAGTATA TCCCTTTGTT GGCAAGTCAG TTAGGTGTTG GCTTCTTTGA
    CGATAAGCTT GGTGCTCTTT GCATGCAATG GTTACAAGAC AAGGTTCACT
    CAATCCGCGA TGCTGCTGCT AACAATCTCA AGCGGCTTGC TGAGGAATTT
    GGTCCTGAAT GGGCAATGCA ACATATAGTT CCTCAGGTTC TTGAGATGGT
    TAACAACCCT CACTATCTCT ACCGAATGAC CATTTTGCGT GCGGTGTCTC
    TTCTTGCACC TGTAATGGGC TCAGAGATTA CATGCTCTAA GCTCTTACCT
    GTAGTAATGA CTGCATCTAA AGACAGAGTT CCAAACATCA AATTCAACGT
    CGCTAAAGTA CTTCAATCCC TCATTCCAAT AGTTGATCAA TCGGTTGTGG
    AGAAGACGAT TCGTCCTGGG CTTGTGGAGC TAAGCGAGGA TCCAGATGTT
    GATGTCAGGT TTTTCGCAAA CCAAGCTCTA CAATCTATTG ACAATGTGAT
    GATGTCTAGC TAAAACCATT AGATCTTGTC TCTCTGCTTA TAATCGTTTT
    CTATTTGATT GAAAAAAAAA ACAAATCTCA AGACTTTTGT AACGTAGTAG
    TGGATTCTCG TCTTGTGTTT TTTATTACAC GCAAACTACT AGAGTGCCTC
    GGTACGGGTT TTGTCCATTG TCTTGCTACT AATGTGTTTA AAACTCTATG
    TTGATAACTA A

    Gene models with high sequence identity

    1. AT3G25800.1 [+] show detail - protein phosphatase 2A subunit A2
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Armadillo-type fold 3.5e-112
    HMMPanther SERINE/THREONINE PROTEIN PHOSPHATASE 2A REGUL 0
    Gene3D Armadillo-like helical 4.1e-181
    ProfileScan HEAT, type 2 9.815
    ProfileScan HEAT, type 2 8.522
    ProfileScan HEAT, type 2 9.927
    ProfileScan HEAT, type 2 9.674
    ProfileScan HEAT, type 2 13.693
    ProfileScan HEAT, type 2 13.018
    ProfileScan HEAT, type 2 12.316
    ProfileScan HEAT, type 2 12.765
    ProfileScan HEAT, type 2 11.669
    ProfileScan HEAT, type 2 8.691
    ProfileScan HEAT, type 2 9.871
    ProfileScan HEAT, type 2 11.135
    ProfileScan HEAT, type 2 10.77
    HMMPfam HEAT 0.0007
    HMMPfam HEAT 3.2e-05
    HMMPfam HEAT 0.01
    HMMPfam HEAT 0.0055
    HMMPfam HEAT 0.0061
    HMMPfam HEAT 0.0023
    HMMPfam HEAT 0.014

    See the detailed result >

    AT3G25800.1

    Model type
    Protein coding
    Short Description
    protein phosphatase 2A subunit A2
    Curator Summary
    one of three genes encoding the protein phosphatase 2A regulatory subunit
    Computational Description
    protein phosphatase 2A subunit A2 (PP2AA2); FUNCTIONS IN: protein phosphatase type 2A regulator activity; INVOLVED IN: response to cadmium ion, regulation of phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), HEAT, type 2 (InterPro:IPR021133), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: protein phosphatase 2A subunit A3 (TAIR:AT1G13320.3); Has 2834 Blast hits to 1736 proteins in 250 species: Archae - 15; Bacteria - 74; Metazoa - 1458; Fungi - 417; Plants - 306; Viruses - 0; Other Eukaryotes - 564 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR