F10235

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F10235

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F10235

Determination of introduced cDNA(s)

  • RAFL06-16-N18 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-16-N18 - Resource: pda07595

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-16-N18 - full reading
    ATCTTCTAAG AAAGAAACAA AGAAAGACTT CACATTTTAC CATTATTTGC 
    TCTGAGCTCA GTAGGAGAGT TCAAGAAACA ATGGCAAAGA TGCAATTATC
    AATCTTTATC GCTGTCGTTG CGCTTATCGT CTGCTCTGCA TCTGCTAAAA
    CCGCAAGCCC TCCAGCTCCA GTGCTGCCAC CGACACCAGC TCCAGCACCA
    GCCCCGGAAA ATGTGAATCT CACCGAGCTT TTAAGTGTAG CTGGTCCGTT
    CCACACATTC CTCGACTACC TTCTCTCGAC TGGAGTCATT GAGACTTTCC
    AAAACCAAGC TAACAACACT GAGGAAGGCA TCACAATCTT TGTCCCTAAA
    GATGATGCTT TCAAAGCTCA GAAGAATCCT CCTTTGTCAA ATCTCACAAA
    GGATCAGCTT AAGCAGCTTG TTCTCTTCCA TGCTCTGCCT CATTACTATT
    CGCTTTCGGA ATTCAAGAAC TTGAGCCAAT CTGGTCCAGT GAGCACCTTT
    GCTGGTGGTC AATACTCCTT GAAATTCACT GATGTTTCTG GCACGGTTAG
    GATTGATTCT TTATGGACCA GGACTAAAGT CAGCAGCAGT GTTTTCTCCA
    CTGACCCTGT TGCGGTTTAC CAAGTGAACC GCGTGCTTCT ACCCGAAGCA
    ATCTTTGGTA CTGATGTCCC TCCAATGCCT GCTCCAGCTC CTGCTCCTAT
    CGTTAGTGCT CCTTCGGATT CTCCTTCAGT TGCTGATTCT GAAGGAGCTT
    CTTCACCAAA GTCCTCACAC AAGAACTCCG GACAAAAGCT GCTACTTGCA
    CCAATCTCCA TGGTTATTTC CGGTTTGGTG GCATTGTTCT TGTGATCAGA
    TGGTTTTGCA GATTGAGTTA TGTTTTTAAG TTACAATGTG AAAGATTGTA
    TTACATCATT TGAATTGTCT TTTTGATTTT TGAAACCCAT TTTTTATTAT
    ACATTTTTAT CATCG

    Gene models with high sequence identity

    1. AT2G04780.1 [+] show detail - FASCICLIN-like arabinoogalactan 7
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart FAS1 domain 3e-24
    superfamily FAS1 domain 1.8e-26
    ProfileScan FAS1 domain 19.747
    HMMPfam FAS1 domain 8.3e-22

    See the detailed result >

    AT2G04780.1

    Model type
    Protein coding
    Short Description
    FASCICLIN-like arabinoogalactan 7
    Curator Summary
    fasciclin-like arabinogalactan-protein 7 (Fla7)
    Computational Description
    FASCICLIN-like arabinoogalactan 7 (FLA7); LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782); BEST Arabidopsis thaliana protein match is: FASCICLIN-like arabinogalactan 6 (TAIR:AT2G20520.1); Has 713 Blast hits to 707 proteins in 79 species: Archae - 4; Bacteria - 65; Metazoa - 1; Fungi - 0; Plants - 633; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR