F10032

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) abnormal (PATO:0000460) (Rosette leaf::Others)
	fruit (PO:0009001)	decreased length (PATO:0000574) (Silique::Shape::short)
	seed (PO:0009010)	present in fewer numbers in organism (PATO:0001997) (Seed::Number::few)
	stem (PO:0009047)	increased thickness (PATO:0000591) (Stem::Shape::thick) decreased thickness (PATO:0000592) (Stem::Shape::thin) abnormal (PATO:0000460) (Stem::Shape::zigzag) abnormal (PATO:0000460) (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F10032

Determination of introduced cDNA(s)

RAFL06-80-P18 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-80-P18 - Resource: pda17243

full reading [+] show sequence

AGAATCATCA AACATCCAAA CTCTATCCTT TCGTTTTCTT GTCAGACAAA 
AACTAATACT AGATGGGTAA CAGTTTAGGC GGCAAGAAAA CGACCAAAGT 
CATGAAGATA GACGGCGAGA CTTTTAAACT GAAAACTCCG GTGACGGCTG 
AGGAGGTCTT AAAAGACTTT CCCGGCCACG TCTTGTTAGA CTCCGAATCC 
GTCAAGCACT ACGGTGCCCG AGCCAAACCA CTTGAGGCGA AGCAGAGGTT 
GGAGGCGAAG CGGCTTTATT TTGTGGTGGA GCCGGTGAAA GAGTGTCCAC 
CGAGAAGGGT AAGATCAGGA ATTCACGTGA GTGCAAAGGA GAGGCTTGAG 
AGTCTCATGC TGGCCCGGAG ATCGTCTTCC GATCTCTCCA TACTCAAACC 
ACCAGGAGGA TGGACGACGG AGGAAGAAGA AGGAGCGGTG AGGAGGGTGA 
AGGTGAGGAT TCCCAAAGCT GAGCTTGAAA AGCTCGTTAA AGAAGGAGCC 
ACCGAAGCCG AAGCTACGCA GAAGATCGCT GCTCTCTTTA TGGCCAAACA 
GAGGCAAGAG GAGGCATATC AGAACACACG ACAGGACGAG CCCGCCACCA 
CGGCCACCGC CACCGCCACC ACCACCGCCA CAAGAGGAGT CAAATCCCGT 
TTGAAACGAG TGAGTTTCAT GGCGGAAAGA GGAGGAGGGA GCGAGATCAC 
TGTAGCTTGA ACCAATAAAC ATATGTATTA GAGAATGCTT CCCAACGTTT 
CTGCAAATTC TATGTACATA AAAAACGCAG AAAGTTTGAG AGAAAGCTTA 
TTCAGATATT CATCCATGTC TCCACTCTAT TGTACTCAAG AGTTTTACTA 
TTATTACATT GTAGAAGAAA CAGTCATTTT ATAGGCAAAA AAAAAA

Gene models with high sequence identity

AT2G01340.1 [+] show detail - At17.1; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation,...
E-value: 0; Score: 100.00

InterPro Scan Digest

See the detailed result >

AT2G01340.1

Model type: Protein coding
Curator Summary: Encodes a protein whose expression is responsive to nematode infection.
Computational Description: At17.1; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation, response to nematode; LOCATED IN: plasma membrane; BEST Arabidopsis thaliana protein match is: plastid movement impaired 2 (TAIR:AT1G66480.1); Has 110 Blast hits to 110 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 107; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link: InterPro Scan - TAIR