F09641

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F09641

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F09641

Determination of introduced cDNA(s)

  • RAFL09-37-F01 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-37-F01 - Resource: pda06152

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-37-F01 - full reading 
    AACTTTTTCA AAAAAAGGAA AAAAAACAGA GCTCACTCAT TATTATCTCT 
    CTAAAAACCC TAGCTTTCTC CATGGGCTTT CCCGTAGGTT ACACAGAGGT 
    TTTCTTACCG AAGCTTTTCG TACAAACGCT TTCGATTCTC GGATTCATCA 
    GAACCATCGT CTTCTCTATC TTCCGCTTCT TGGGTCTCTC AGATTTTCTC 
    GAAATGGATC AAACCTGGCC CGATTACACA TCGTACCCGA CCCGAATACC 
    CGAAACCCGC TCACCTTTCT CCGCACTCCT AATTAGAGAG ATCCTACCGG 
    TTATCAAATT CGAAGAGTTA ACGAATTCCG GCGAAGATCT ACCGGAAAAC 
    TGCGCCGTTT GTCTATACGA ATTCGAAGGA GAACAAGAGA TCCGGTGGCT 
    GAGAAATTGC AGACATATAT TTCACCGGAG CTGTCTTGAC CGTTGGATGG 
    ATCATGATCA GAAGACGTGT CCACTTTGTA GAACACCGTT TGTTCCAGAT 
    GAGATGCAAG AAGAGTTTAA TCAACGGCTA TGGGCTGCTT CTGGTGTTCA 
    TGATTTTCAC TGTCCCGTGA CCGAATTATT ATAGAAGAAG CCACGCTTTT 
    CTATCTTTTT CTGTGTCCCT TATGTTCTTT TTTGTTTTGA CTTTCACCCC 
    TCTACTTTTG ATGTTGCTTT TTTCACCCCT CTTACTGACA TTTAGACTTG 
    CCACGCTTTT ATGTGTGTAT ATACTCCTTA CATACGAAAA AAAAAAAAAA 
    AA

    Gene models with high sequence identity

    1. AT3G61460.1 [+] show detail - brassinosteroid-responsive RING-H2
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther RING FINGER PROTEIN 38 9.8e-12
    HMMPanther RING FINGER PROTEIN 6/12/38 9.8e-12
    HMMSmart Zinc finger, RING-CH-type 0.008
    HMMSmart Zinc finger, RING-type 6.3e-06
    Gene3D no description 1.6e-11
    superfamily RING/U-box 8.6e-15
    HMMPfam Zinc finger, C3HC4 RING-type 9.3e-09
    ProfileScan Zinc finger, RING-type 12.43

    See the detailed result >

    AT3G61460.1

    Model type
    Protein coding
    Short Description
    brassinosteroid-responsive RING-H2
    Curator Summary
    Encodes a novel ring finger protein and forms an N-terminal hydrophobic domain and a C-terminal RING-H2 signature. Expression is down regulated by brassinolide.
    Computational Description
    brassinosteroid-responsive RING-H2 (BRH1); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to brassinosteroid stimulus, response to chitin; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G63840.1); Has 6755 Blast hits to 6739 proteins in 268 species: Archae - 0; Bacteria - 0; Metazoa - 1714; Fungi - 535; Plants - 3593; Viruses - 29; Other Eukaryotes - 884 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR