F09132

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F09132

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F09132

Determination of introduced cDNA(s)

  • RAFL04-18-D21 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-18-D21 - Resource: pdz87422

    5 prime EST [+] show sequence

    Nucleotide sequence: RAFL04-18-D21 - 5 prime EST 
    GATGTGGCTC TCTCTTCTCT TTCTCTTTCT CTTTCCTTTT TCTCTTTCGA 
    TCAACAAAAC CACATCTCTG AACTTGAACC AATTTCTCTT CTCCCCCTTC 
    CGGTTATCGG ATTACCAGAT CTCGTTTCCC GCGATCTAGT TTATTCTTTG 
    AAAAAGTGAT AGAAGCAGAA ATGGGAAGGG GCAAGATCGC GATTAAGAGG 
    ATCAATAACT CTACGAGCCG TCAGGTTACG TTCTCGAAGC GAAGGAATGG 
    ATTGTTGAAG AAAGCTAAGG AGCTTGCGAT TCTCTGCGAT GCTGAGGTTG 
    GTGTCATCAT CTTCTCCAGC ACCGGTAGGC TCTACGATTT CTCCAGCTCC 
    AGCATGAAAT CGGTCATAGA GAGATACAGC GATGCCAAAG GAGAAACCAG 
    TTCAGAAAAT GATCCCGCTT CAGAAATTCA GTTCTGGCAA AAGGAGGCTG 
    CGATTCTAAA GCGTCAGCTA CATAACTTGC AAGAAAACCA CCGGCAAATG 
    ATGGGGGAGG AGCTCTCTGG ACTAAGTGTA GAAGCTTTAC AGAATTTGGA 
    AAATCAGCTT GAATTGAGCC TTCGTGGCGT TCGANTGAAA AAGGTTTTGA 
    TGCTGTGACA AATAAGTCAA ATTTTGGAAC CATTAGAAGA AGTAATGGAT 
    GTACTCTATC TACGCTCTTC TTTG

    Gene models with high sequence identity

    1. AT3G57230.1 [+] show detail - AGAMOUS-like 16
      E-value: 0; Score: 99.66

    3 prime EST [+] show sequence

    Nucleotide sequence: RAFL04-18-D21 - 3 prime EST 
    GGTCATGTTT ATGTTTTTAT TTTCGCTTAT GCAGAGGCAA GCTGACACAG 
    TGAATTGTGA TATGATTCCG ACGAGGTCAA CATAAGTGTG TTGGCACACC 
    GAATTATATT ATGCAATGAA GGAAAAATAG TTGAGTTGGA TAGCTTTTGA 
    ATGCGTCTCA TGATCATGCC TGCGGTTGGC CTGAGCTGAA GATGGACATG 
    TTCGTTCGAG GTATCTCTCA TGTCTAGACC ATTTGTGAGA AGAGAATTCT 
    TGTTTGCGAT TTTCACACCC TCGACCTCTG AAACCTTTTC ATGTAGTTCC 
    ATGTTCTGTT GGTGCATTAG GTTTACTTTC TTGTGGAGGT CTAAATTCTC 
    TTGGTGAACG AGATTCCCCT CTCGGTTAAG TACTTGTATT TCTTCGATTA 
    ACATTTGATC CTGCAAAAGG CAAAGAAGAG CGTAGATAGA GTACATCCAT 
    TACTTCTTCT AAATGGTTCC AAAATTTGAC TTATTTGTCA CAGCATCAAA 
    ACCTTTTTCA TTC

    Gene models with high sequence identity

    1. AT3G57230.2 [+] show detail - AGAMOUS-like 16
      E-value: 0; Score: 99.51

    AT3G57230.1

    Model type
    Protein coding
    Short Description
    AGAMOUS-like 16
    Curator Summary
    MADS-box transcription factor. Expressed in leaf, root and stem, with higher RNA accumulation in guard cells and trichomes.
    Computational Description
    AGAMOUS-like 16 (AGL16); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, stomatal lineage progression; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 21 (TAIR:AT4G37940.1); Has 7328 Blast hits to 7327 proteins in 923 species: Archae - 0; Bacteria - 10; Metazoa - 652; Fungi - 320; Plants - 6229; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR

    AT3G57230.2

    Model type
    Protein coding
    Short Description
    AGAMOUS-like 16
    Curator Summary
    MADS-box transcription factor. Expressed in leaf, root and stem, with higher RNA accumulation in guard cells and trichomes.
    Computational Description
    AGAMOUS-like 16 (AGL16); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, stomatal lineage progression; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 21 (TAIR:AT4G37940.1); Has 7191 Blast hits to 7190 proteins in 917 species: Archae - 0; Bacteria - 14; Metazoa - 643; Fungi - 316; Plants - 6129; Viruses - 0; Other Eukaryotes - 89 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR