F08939

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F08939

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F08939

Determination of introduced cDNA(s)

  • RAFL09-43-F09 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-43-F09 - Resource: pda09781

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-43-F09 - full reading 
    AAAAAGAAGT CTTCTTCCAT AGTTACTAGT TAGAGCTGCG AAACGAAAAT 
    CGTAACGATA GTGCATCAAT GGCTTATGCG TCACGCATCA TTAATCATTC 
    CAAGAAGTTG AAGGATGTTT CCACTTTACT ACGCCGTGAG AATGCTGCAA 
    CGATCCGCTA CTACTCGAAT ACTAATCGAG CTCCTCTGAA CAGAGAAGAT 
    ACTTTCAATT CCCGTCTTGG TTATCCCCCA CTGGAGAGGA TTTCCATATG 
    TAGCACCAGC ACTTTACCGG TGTCCATTAT TTTTTCAACT ACGAGATCAA 
    ATCTAAGCAG TGCAATGGGA AGGCCAATAT TTGGAAAAGA ATTTTCATGT 
    TTGATGCAAT CAGCTAGAGG ATTTTCATCG GGTTCAGATC TGCCTCCTCA 
    TCAAGAGATC GGGATGCCTT CTCTCTCGCC AACAATGACT GAGGGTAACA 
    TCGCCAGGTG GCTGAAAAAA GAAGGTGATA AAGTTGCTCC TGGGGAAGTA 
    CTCTGTGAAG TTGAAACTGA CAAAGCAACT GTCGAAATGG AATGCATGGA 
    AGAGGGCTAT CTCGCCAAGA TTGTAAAGGC GGAAGGTTCA AAAGAAATTC 
    AAGTCGGCGA GGTAATTGCT ATTACAGTTG AAGATGAAGA GGACATTGGA 
    AAGTTCAAAG ATTACACCCC ATCATCTACT GCTGATGCCG CTCCTACAAA 
    AGCAGAACCA ACTCCTGCCC CACCAAAGGA AGAGAAGGTC AAACAGCCAT 
    CATCGCCTCC TGAACCGAAG GCCTCCAAGC CTAGCACACC TCCCACAGGA 
    GATCGTGTTT TTGCTAGTCC TCTTGCAAGA AAGTTGGCTG AAGATAATAA 
    CGTGCCTCTC TCAGACATCG AAGGCACAGG TCCTGAAGGA CGGATAGTGA 
    AGGCAGATAT CGATGAGTAT TTAGCTTCAA GTGGTAAAGG AGCTACTGCG 
    AAGCCATCTA AGTCAACTGA TTCTAAGGCC CCAGCTTTGG ACTATGTTGA 
    CATCCCTCAT TCTCAGATAC GAAAGGTCAC AGCCTCACGT TTGGCATTCT 
    CAAAGCAAAC TATCCCTCAC TATTACTTAA CCGTCGATAC ATGTGTTGAC 
    AAACTTATGG CTCTGAGGAG TCAGCTTAAT TCATTCAAAG AGGCTTCTGG 
    TGGGAAACGG ATATCTGTCA ATGATCTTGT TGTTAAGGCT GCTGCATTAG 
    CTCTCAGAAA AGTTCCTCAG TGCAATAGTT CATGGACTGA CGATTACATC 
    CGCCAGTTTA AAAATGTGAA CATCAACGTC GCGGTGCAGA CAGAAAACGG 
    GCTGTATGTC CCTGTTGTGA AGGACGCAGA CAGGAAGGGT CTGTCCACAA 
    TTGGAGAAGA AGTTCGGTTA TTAGCTCAAA AAGCAAAAGA GAGCAGCTTA 
    AAGCCAGAAG ATTATGAGGG AGGAACATTT ACTGTCTCTA ACTTGGGAGG 
    ACCTTTTGGC ATCAAGCAAT TCTGTGCAGT CGTTAATCCA CCTCAAGCCG 
    CCATTCTAGC AGTTGGATCC GCTGAAAAGA GAGTTGTCCC TGGTAACGGT 
    CCAGATCAAT TCAACTTTGC TTCTTACATG CCTGTTACAC TGAGCTGTGA 
    CCATCGCGTA GTAGACGGTG CCATTGGAGC TGAATGGTTG AAAGCATTTA 
    AGGGATACAT CGAGAACCCT AAATCTATGT TACTCTAAAA GAGAACCAAC 
    CACGCAATGG AAAAAAACAC ATCAAAAGCT GTCGTAAGAG TCTCTGTACC 
    AATTAGATTT TCTTTGTTTT CCTCTGTTTC TTTCGGGTTT TTCTAAAAAA 
    GACTTTTGTT GTTTTCTGAA TAAATATGGT GTGAGGGATT CAGCATTTCC 
    ACTGTAAACT GGATTTTAGG ATATTCTTTG CTGGTTCTGG TTGTTCAATG 
    TTCATTGAGG AGGGCTGTGA AATAAAACTC CCATTATTTT GTCATGTGAA 
    GTACTACCCT ATATGGGATG GGTTTTGTAA CCATGCTTGA TAGTTGATAC 
    AAGTGGATGG ATTTGAGT

    Gene models with high sequence identity

    1. AT1G54220.1 [+] show detail - Dihydrolipoamide acetyltransferase, long form protein
      E-value: 0; Score: 99.95

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam 2-oxoacid dehydrogenase acyltransferase, catalytic domain 7e-78
    HMMPfam Biotin/lipoyl attachment 1.2e-19
    HMMPfam E3 binding 3.2e-16
    ProfileScan Biotin/lipoyl attachment 15.443
    HMMPanther DIHYDROLIPOAMIDE ACETYLTRANSFERASE COMPONENT 1.4e-296
    HMMPanther DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE- 1.4e-296
    Gene3D no description 9.3e-32
    Gene3D E3 binding 4.8e-07
    Gene3D no description 5.7e-73
    HMMTigr Dihydrolipoamide acetyltransferase, long form 2.1e-210
    superfamily CoA-dependent acyltransferases 1.7e-79
    superfamily Single hybrid motif 5.4e-30
    superfamily E3 binding 5.5e-13
    PatternScan 2-oxo acid dehydrogenase, lipoyl-binding site 0

    See the detailed result >

    AT1G54220.1

    Model type
    Protein coding
    Short Description
    Dihydrolipoamide acetyltransferase, long form protein
    Computational Description
    Dihydrolipoamide acetyltransferase, long form protein; FUNCTIONS IN: dihydrolipoyllysine-residue acetyltransferase activity, acyltransferase activity; INVOLVED IN: pyruvate metabolic process, metabolic process, acetyl-CoA biosynthetic process from pyruvate; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 2-oxo acid dehydrogenase, lipoyl-binding site (InterPro:IPR003016), Dihydrolipoamide acetyltransferase, long form (InterPro:IPR006257), E3 binding (InterPro:IPR004167), 2-oxoacid dehydrogenase acyltransferase, catalytic domain (InterPro:IPR001078), Single hybrid motif (InterPro:IPR011053), Biotin/lipoyl attachment (InterPro:IPR000089); BEST Arabidopsis thaliana protein match is: Dihydrolipoamide acetyltransferase, long form protein (TAIR:AT3G13930.1); Has 21519 Blast hits to 19723 proteins in 2310 species: Archae - 104; Bacteria - 12081; Metazoa - 737; Fungi - 478; Plants - 377; Viruses - 0; Other Eukaryotes - 7742 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR