F01507

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F01507

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F01507

Determination of introduced cDNA(s)

  • RAFL05-17-I01 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-17-I01 - Resource: pda17116

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-17-I01 - full reading 
    CCCGAAAAAC CCAAATTCTC TCAGCGCCGG TCAAATACTT GTCTCTCTCT 
    CTCTCTCTCT TTCACTCTTG TCTTGTCTCC TTCGAAGCTG TTTGTTCTGT 
    AAGAAAGATG GAAGCAGGTG GCGCGTACAA TCCACGCACT GTTGAAGAGG 
    TGTTTAGGGA TTTTAAGGGT CGTAGAGCTG GCATGATTAA GGCTTTAACC 
    ACTGATGTTC AGGAGTTTTT CCGACTTTGT GATCCCGAAA AGGAGAACCT 
    TTGCCTTTAC GGACATCCAA ATGAGCACTG GGAAGTGAAT TTGCCAGCTG 
    AAGAGGTTCC TCCTGAGCTC CCAGAGCCTG TCTTGGGTAT CAATTTTGCC 
    AGAGACGGGA TGGCGGAAAA GGATTGGTTG TCCCTTGTTG CTGTCCACAG 
    TGATGCTTGG CTTCTTGCTG TTGCTTTCTT TTTTGGAGCC AGGTTTGGAT 
    TTGACAAAGC TGATAGGAAG AGGCTTTTCA ATATGGTGAA TGACCTCCCA 
    ACAATCTTTG AGGTTGTAGC TGGCACTGCT AAGAAACAAG GAAAAGATAA 
    GTCCTCTGTT TCCAACAACA GCAGCAACAG ATCCAAATCA AGCTCCAAGC 
    GAGGATCTGA ATCCCGTGCC AAGTTCTCAA AGCCGGAGCC GAAAGATGAT 
    GAGGAGGAGG AAGGGGAAGG TGTGGAAGAG GAGGATGAGG ATGAGCAAGG 
    TGAAACACAG TGTGGAGCAT GTGGTGAGAG CTATGCAGCT GATGAGTTCT 
    GGATTTGCTG TGACCTCTGT GAGATGTGGT TTCATGGAAA GTGTGTTAAG 
    ATAACACCAG CAAGAGCTGA GCACATCAAG CAATACAAGT GCCCTTCTTG 
    CAGCAACAAA AGGGCTCGTT CCTAAATTTG TTGACCGCTC GCTTCTGTGT 
    ATCTACCTTT GCATATGATG ATGAACAGCT TAACTGTTTG GTTTAGATCA 
    GATTTGTCAT ATGGATTTGG TAATTTAGGA AGACATTTTA GTTTTTTCAT 
    TGTTACATTT TGGCGATTGA AGGGATAACT CTTTGTTTAG GGGAAAAAAA 
    AAA

    Gene models with high sequence identity

    1. AT5G26210.1 [+] show detail - alfin-like 4
      E-value: 0; Score: 99.90

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Protein of unknown function DUF3594 1.4e-80
    HMMPfam Zinc finger, PHD-finger 9.2e-10
    PatternScan Zinc finger, PHD-type, conserved site 0
    HMMPanther PHD/F-BOX CONTAINING PROTEIN 9.1e-11
    superfamily Zinc finger, FYVE/PHD-type 1.2e-11
    Gene3D no description 1.6e-15
    ProfileScan Zinc finger, PHD-finger 9.25
    HMMSmart Zinc finger, PHD-type 1.8e-08

    See the detailed result >

    AT5G26210.1

    Model type
    Protein coding
    Short Description
    alfin-like 4
    Curator Summary
    AL4 encodes a member of the Alfin-Like family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.
    Computational Description
    alfin-like 4 (AL4); CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Protein of unknown function DUF3594 (InterPro:IPR021998), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: alfin-like 3 (TAIR:AT3G42790.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR