ET9617

CSHL Arabidopsis genetrap mutant lines

Original: ET9617

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET9617

Determination of insertion point(s)

3 prime edge [+] show sequence
1. Chromosome: 4; Position: 460933 [Map]; Strand: c
  - AT4G01060.2 - [+] show detail - CAPRICE-like MYB3
    Distance: 0; Region: exon3 (CDS)
  - AT4G01060.3 - [+] show detail - CAPRICE-like MYB3
    Distance: 0; Region: exon3 (CDS)
  - AT4G01060.1 - [+] show detail - CAPRICE-like MYB3
    Distance: 0; Region: exon3 (CDS)
Flanking Genome Sequence: ET9617 - 3-prime edge
```
TTTACCGACC GTTACCGACC GTTTTCATCC CTAATCCCAG GAAGAACCGC 
TGGAGAAATT GAGAGGTTTT GGGTCATGAA AAATTGAAAA GTGATCAATA 
TATCTCTATA GTTTCACTGA TTGTTTCGAT TATATTCCGT TGTATTTTAA 
ATTTACCAAC TCTGTTATAA GAAGAAAACT TTCTTAAATC CCAAACCATT 
TAACTCTCAA GAACCATTTA TTGTGTGGGC TACGAATATT TGGGCCTTCC 
AAGCCTAAAT TTATTTTTTT GCCATCCTAC ATATGGTACT GTCAACTGGA 
CTAG
```

3 prime edge [+] show sequence

Chromosome: 4; Position: 460988 [Map]; Strand: c
- AT4G01060.2 - [+] show detail - CAPRICE-like MYB3
  Distance: 0; Region: exon3 (3UTR)
- AT4G01060.3 - [+] show detail - CAPRICE-like MYB3
  Distance: 0; Region: exon3 (3UTR)
- AT4G01060.1 - [+] show detail - CAPRICE-like MYB3
  Distance: 0; Region: exon3 (3UTR)

AAATTGAGAG GTTCTGGGTC ATGAAAAATT GAAAAGTGAT CAATATATCT 
CTATAGTTTC ACTGATTGTT TCGATTATAT TCCGTTGTAT TTTAAATTTA 
CCAACTCTGT TATAAGAAGA AAACTTTCTT AAATCCCAAA CCATTTAACT 
CTCAAGAACC ATTTATTGTG TGGGCTACGA ATATTTGGGC CTTCCAAGCC 
TAAATTTATT TTTTTGCCAT CCTAGTAATT TCTAGAAGCT AAGTCGTAGA 
TGTTGTACGT GGATATTTCA TTAATTTCTG CTTAAAGCCT TAAACACTTG 
ACACATGAAA GTGGCAAATA ACCTACTTCA AAACAAAACA AAAGTGGAAG 
TCGTTTTACA AGTCATAAAA TGACATGCTG TCTTCAGGTC CCACACATGT 
TTTATGTATA TTTGTCGTTA ACGCTATTTC ACCTACTCCA CACACACACA 
CTTATTTTCT TGGTCATCCA CGTTTTAGAC TTTTAGTTTT TCCTTAAATC 
TCTGATCCAT AACCACGAAA CGGACGATCT TCAATCAAAA CCCATAACGT 
ATCTCATTAC CAAACAAACA CATTGTTAAC ATCTATGTCT CATTGATGAT 
CTAATATCTA TGTTACTTTT GAGATTACAA CAAGTGTTTA AAACTTAAAC 
AAACGGTTAT TTTAACTATT GACGATAGAC GATGGATGAT TTTCTTGAAC

5 prime edge [+] show sequence
1. Chromosome: 4; Position: 460834 [Map]; Strand: c
  - AT4G01060.2 - [+] show detail - CAPRICE-like MYB3
    Distance: 0; Region: intron2 (CDS)
  - AT4G01060.3 - [+] show detail - CAPRICE-like MYB3
    Distance: 0; Region: intron2 (CDS)
  - AT4G01060.1 - [+] show detail - CAPRICE-like MYB3
    Distance: 0; Region: intron2 (CDS)
Flanking Genome Sequence: ET9617 - 5-prime edge
```
CTATCAGTTC CCACCTTTCA TCAAATAATA ACACACAAAA TTCAGCTTTT 
ACTATGGTGT TACAATTAAA TTATTTTCCT ACGAAAATAA TATACATTAT 
TAGTTTAAAA GATCAAACCT GTCACCGACA AGCTTATGCA TTCTACATAT 
GGTACTGTCA ACTGGACTAG GT
```

5 prime edge [+] show sequence

Chromosome: 4; Position: 460830 [Map]; Strand: c
- AT4G01060.2 - [+] show detail - CAPRICE-like MYB3
  Distance: 0; Region: intron2 (CDS)
- AT4G01060.3 - [+] show detail - CAPRICE-like MYB3
  Distance: 0; Region: intron2 (CDS)
- AT4G01060.1 - [+] show detail - CAPRICE-like MYB3
  Distance: 0; Region: intron2 (CDS)

CAGTTCCCAC CTTTCATCAA ATAATAACAC ACAAAATTCA GCTTTTACTA 
TGGTGTTACA ATTAAATTAT TTTCCTACGA AAATAATATA CATTATTAGT 
TTAAAAGATC AAACCTGTCA CCGACAAGCT TATGCATTCT AGAGACCAAA 
TCCTCTTCTT CTTGACTCAT GTTCACAACT TCCCACTCAA GACTACTCAC 
TTCTGTTCCT TGTCGCCACC AAAATTCAGT TTTCTCATTA TATATAGAGA 
AAAGTTTAAA AAAAAACTTG GAAAAATTAG AAAACGAAGG TGTTTAAGTT 
TTCAGCTTAC CTCCTTCAGA AGAAGAAGTC ACGATGGAGT TGGTCTTGGT 
TTGCTTAGTC CTGCGATGGT TATCCATGTC AGACAGCACG GTATTACAAA 
GAAGAAGAAG AAAGAAACTA AGAGAGAGTG GTCGTATTTT GAAGGTTGCA 
CACGAACCAT CATTTCTATT TATAGCAACT AACCAAATCA AGTAACCAAC 
GGTCCAACGG GTTTGGTCGG TTTCTATGTT AATTTACTCA ATTGGTTTTG 
TTCTCATTAA TTAAATTAAT TAATTGTTAT TGCAAGTTGC AAGTTTGCAA 
CCAATAAAAA CCACAAGTAC CCGTGACTTC ATTTACTCCG TTGTGATGGC 
TTGGACTGGA ACATAAGTTG TATAAATATT GATACATGCC GTTAATTAAG 
ATCATTAATA ATCAACAACA ATT

AT4G01060.1

Model type: Protein coding
Short Description: CAPRICE-like MYB3
Curator Summary: Encodes a Myb-related protein similar to CPC. Involved in epidermal cell differentiation. Mutants have reduced numbers of root hairs and increased trichome branching. Involved in endoreduplication. Loss of function mutants are hypertrophic and early flowering.
Computational Description: CAPRICE-like MYB3 (CPL3); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-related (InterPro:IPR012287), MYB-like (InterPro:IPR017877), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT2G46410.1); Has 2727 Blast hits to 2727 proteins in 179 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2715; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G01060.2

Model type: Protein coding
Short Description: CAPRICE-like MYB3
Curator Summary: Encodes a Myb-related protein similar to CPC. Involved in epidermal cell differentiation. Mutants have reduced numbers of root hairs and increased trichome branching. Involved in endoreduplication. Loss of function mutants are hypertrophic and early flowering.
Computational Description: CAPRICE-like MYB3 (CPL3); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-related (InterPro:IPR012287), MYB-like (InterPro:IPR017877), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT2G46410.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G01060.3

Model type: Protein coding
Short Description: CAPRICE-like MYB3
Curator Summary: Encodes a Myb-related protein similar to CPC. Involved in epidermal cell differentiation. Mutants have reduced numbers of root hairs and increased trichome branching. Involved in endoreduplication. Loss of function mutants are hypertrophic and early flowering.
Computational Description: CAPRICE-like MYB3 (CPL3); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-related (InterPro:IPR012287), MYB-like (InterPro:IPR017877), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT2G46410.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR