ET8796

CSHL Arabidopsis genetrap mutant lines

Original: ET8796

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET8796

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28603697 [Map]; Strand: c
      • AT1G76240.1 - [+] show detail - Arabidopsis protein of unknown function (DUF241)
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET8796 - 3-prime edge 
    ACTGAGACCG TCGGTGATCC AAGAGGTGGT GCGGCTGTGA GTTTCTCCGG 
    CGAATGAGAA CCAGGATTTG AGCTGAGAGA TCTCGTGGTT AACGTGGGAG 
    ATTAAGGGAT GAGACCGGCA GGGTAGACTG ATGGGGGTTG TGTGGTGAGA 
    GACACGTGGC TTTGACGGTG GAGATGATCG GCCGCAAGGT TTGTTAGGGA 
    ATGAGAGTGA TCGTCGGAAA ACTCCAACCA TTCTCGGCGG AGAGAGAGAG 
    AAGAGAGAGT TGTTGTGATG GTTTGATTTT GAAATGGTGA AAGATGAGGT 
    ACAAGGAGCG TTTATATACG CAAGTTGGTG GGGTTTCGGC AATTGAAGTA 
    TGAGATGATG TGCACGTGGG AGAGTTACGC TATTTTTTTA GAATAATTGC 
    TTTCTTATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28603655 [Map]; Strand: c
      • AT1G76240.1 - [+] show detail - Arabidopsis protein of unknown function (DUF241)
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET8796 - 3-prime edge 
    CTGAAGTATA TCAGCGAGCG TTTCTTGAAC GTCCTTGAAA GAGACTGAGA 
    CCGTCGGTGA TCCAAGAGGT GGTGCGGCTG TGAGTTTCTC CGGCGAATGA 
    GAACCAGGAT TTGAGCTGAG AGATCTCGTG GTTAACGTGG GAGATTAAGG 
    GATGAGACCG GCAGGGTAGA CTGATGGATG TTGTGTGGTG AGAGACACGT 
    GGCTTTGACG GTGGAGATGA TCGGCCGCAA GGTTTGTTAG GGAATGAGAG 
    TGATCGTCGG AAAACTCCAA CCATTCTCGG CGGAGAGAGA GAGAAGAGAG 
    AGTTGTTGTG ATGGTTTGAT TTTGAAATGG TGAAAGATGA GGTACAAGGA 
    GCGTTTATAT ACGCAAGTTG GTGGGGTTTC GGCAATTGAA GTATGAGATG 
    ATGTGCACGT GGGAGAGTTA CGCTATTTTT TTAGAATAAT TGCTTTCTTA 
    TTTCCCCAAC TATATTTTTA TTTAGTTCGG TTAAGATATA CATTTTATAC 
    CGTATCTATT TTGTTCTTCC AATTTTACAC GAGCATACAC CTATTTATTA 
    GACGTTATAG TACTTTCTTG TTTCAATTTT ACACGATTGT GTATACAACT 
    GTATATTAAT T

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11044571 [Map]; Strand: w
      • AT4G20510.1 - [+] show detail - transposable element gene
        Distance: 0; Region: intron2 (NonCoding)
    2. Chromosome: 4; Position: 11115669 [Map]; Strand: c
      • AT4G20725.1 - [+] show detail - transposable element gene
        Distance: -1303; Region: intergenic
      • AT4G20730.1 - [+] show detail - transposable element gene
        Distance: 2129; Region: intergenic
    Flanking Genome Sequence: ET8796 - 5-prime edge 
    GAAAATGTCT CGCAAAAGCT CTAGTTGCAC ATCAAATTTT GTTTCAGACT 
    AGGCACATTG AGGACTATTC CAATTGTTTC TTTTACAGGA AGCAAGATGA 
    ATAACTTCTT GATCTTGAGT CCGTTTGACG AACAGTCAGG TGTGGTGGAC 
    TATCGGATT

  • 5 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: ET8796 - 5-prime edge 
    CCCCCCCCCC CCCCCCCCCC CCCCCCCCCC CCCC

AT1G76240.1

Model type
Protein coding
Short Description
Arabidopsis protein of unknown function (DUF241)
Computational Description
Arabidopsis protein of unknown function (DUF241); FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF241, plant (InterPro:IPR004320); BEST Arabidopsis thaliana protein match is: Arabidopsis protein of unknown function (DUF241) (TAIR:AT2G17080.1); Has 409 Blast hits to 404 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 404; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G20510.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
similar to filament protein-related [Arabidopsis thaliana] (TAIR:AT4G20730.1)
Link
InterPro Scan - TAIR

AT4G20725.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 1.2e-31 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)
Link
InterPro Scan - TAIR

AT4G20730.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
similar to ASY2, DNA binding [Arabidopsis thaliana] (TAIR:AT4G32200.1); similar to filament protein-related [Arabidopsis thaliana] (TAIR:AT3G10100.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G09910.1); similar to hypothetical protein 27.t00126 [Brassica oleracea] (GB:ABD65062.1); contains domain (Phosphotyrosine protein) phosphatases II (SSF52799)
Link
InterPro Scan - TAIR