ET6252

CSHL Arabidopsis genetrap mutant lines

Original: ET6252

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage
Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET6252

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 54998 [Map]; Strand: c
      • AT4G00140.1 - [+] show detail - Calcium-binding EF-hand family protein
        Distance: -1549; Region: intergenic
      • AT4G00150.1 - [+] show detail - GRAS family transcription factor
        Distance: 2201; Region: intergenic
    Flanking Genome Sequence: ET6252 - 3-prime edge
    TTTCATCCCT ACACACCCAT CAATTTCAGA TCCCTCGCTC TCCACCTTAT 
    TATATATCTT TTTAGGGGGT CGGAATTATA TTACGTACAA CCTTTTGTTG
    GTATACTCCT CTTCTTCTTC TTCTTTTGTG CAACCGTATA CTCATTTTCT
    CAAATTCAAT GTTTCTAAAT TATATATATT AAACACACAT TTGGTAGTAA
    CAAACTTGTC GCTTTGGATT TTATCATTTT AATTACAGTT CGTATAAATA
    TCTGTTGACC CTTATTAATA TGATTGAACA AACAACTAAT TTGACTAAAA
    TGCGTCATCA TAGCAAATGT ATGTTATGTT GAAATAATGA TCTCTTACAT
    TAGTTACATA CCACTTTGAA AAGGGATCGA GGATGCATGA TGCGTGATGC
    GTTCCACCAT CCGGTGCCTT TCGTTGTATC ACAATATATG AGGTTATGTT
    AGTGCCATCG TTTATAAACC AATTGTTAGA AATTTGGAAT TATATACATA
    TACATTTAAC GCACAATATC AACATTGCAA TACTCGTAAT GATTG

AT4G00140.1

Model type
Protein coding
Short Description
Calcium-binding EF-hand family protein
Computational Description
embryo sac development arrest 34 (EDA34); INVOLVED IN: polar nucleus fusion; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: calmodulin-related (TAIR:AT1G73440.1); Has 80 Blast hits to 56 proteins in 14 species: Archae - 3; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00150.1

Model type
Protein coding
Short Description
GRAS family transcription factor
Computational Description
HAIRY MERISTEM 3 (HAM3); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor (TAIR:AT2G45160.1); Has 2283 Blast hits to 2233 proteins in 293 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 2281; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR